BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH02RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1628 0.0
>3x_Contig1720
Length = 19870
Score = 1628 bits (821), Expect = 0.0
Identities = 888/903 (98%), Gaps = 7/903 (0%)
Strand = Plus / Minus
Query: 54 ggcaaacgattttgcttgtgcgatatgagtcaacttttgctt-aagaaacgcacattatg 112
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 19870 ggcaaacgattttgcttgtgcgatatgagtcaacttttgcttcaagaaacgcacattatg 19811
Query: 113 cttctgtttcaagaagttagccaagtttactatgaatactggacaattgaagttccatga 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19810 cttctgtttcaagaagttagccaagtttactatgaatactggacaattgaagttccatga 19751
Query: 173 gttgaaagcgataccaaattgggctccc-tcaggtttgaattttgcaagttcttccttcg 231
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 19750 gttgaaagcgataccaaattgggctcccctcaggtttgaattttgcaagttcttccttcg 19691
Query: 232 ataggaccttatactcttcc-aaatattggctcaaggaattaatcttggccttgggaggc 290
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 19690 ataggaccttatactcttcccaaatattggctcaaggaattaatcttggccttgggaggc 19631
Query: 291 tggtaatcccataattccgtggatggtctgcgagctaatcctaaccactctgcatcttta 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19630 tggtaatcccataattccgtggatggtctgcgagctaatcctaaccactctgcatcttta 19571
Query: 351 cccttgtagaaatccagtaatttttcacttaaagtaggtaaattctcatacgtgaaccta 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19570 cccttgtagaaatccagtaatttttcacttaaagtaggtaaattctcatacgtgaaccta 19511
Query: 411 tcataccacatgacgtttttatcatcaggtgaaatacaagaccaaacaccacctgcccat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19510 tcataccacatgacgtttttatcatcaggtgaaatacaagaccaaacaccacctgcccat 19451
Query: 471 ggactagtataaccagtgggtgactggtcacctggtaagtaatctgccacaatgcagata 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19450 ggactagtataaccagtgggtgactggtcacctggtaagtaatctgccacaatgcagata 19391
Query: 531 ttttcacccggaacgccgtacaattcggtcaaacagtacgtgacgtacaaaccagaaata 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19390 ttttcacccggaacgccgtacaattcggtcaaacagtacgtgacgtacaaaccagaaata 19331
Query: 591 cctgcaccaacaacagtgatcaatggctgagatttgttagacatgtcatttgataatttc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19330 cctgcaccaacaacagtgatcaatggctgagatttgttagacatgtcatttgataatttc 19271
Query: 651 aggctcaaataaagcttactgatgaaattgtgactttcaccgctatagatatattcagta 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19270 aggctcaaataaagcttactgatgaaattgtgactttcaccgctatagatatattcagta 19211
Query: 711 gatgttttactctactatagaaactgngaatgctcaagtaagtgatctgccaattggctg 770
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 19210 gatgttttactctactatagaaactgggaatgctcaagtaagtgatctgccaattggctg 19151
Query: 771 tttcctacttcaaactgaaactangttggaaaactttactgtagaaagagaatctcaatc 830
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 19150 tttcctacttcaaactgaaactaggttggaaaactttactgaggaaagagaatctcaatc 19091
Query: 831 ccatgtcccttcacttatgtatgnntaccgatgacaaaccatgctattnctgacaaacgc 890
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 19090 ccatgtcccttcacttatgtatg-ttaccgatgacaaaccatgctatt-ctgacaaacgc 19033
Query: 891 gctgnctcgaccccaccttatcttanatatcacttncagctcatttacagtncaagtcat 950
|||| |||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 19032 gctgcctcgaccccacc-tatcttagatatcacttccagctcatttacagt-caagtcat 18975
Query: 951 gtt 953
|||
Sbjct: 18974 gtt 18972
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5873
Number of Sequences: 1807
Number of extensions: 5873
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)