BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH03FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1159 1671 0.0
>3x_Contig1159
Length = 4873
Score = 1671 bits (843), Expect = 0.0
Identities = 864/870 (99%), Gaps = 1/870 (0%)
Strand = Plus / Minus
Query: 90 tatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 tatctttgatgaactctacttcacctcgtgtgaaatgtcaagctactttggccttgagaa 1411
Query: 150 acttagcttcagataccaactaccaattggagattgttagagctggtggattaccagact 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 acttagcttcagataccaactaccaattggagattgttagagctggtggattaccagact 1351
Query: 210 tggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgtatca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 tggttcaattgattcagtcggattctttaccattagtcttggccagcgtcgcatgtatca 1291
Query: 270 gaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 gaaatatttccatccatccattaaacgaaggtctaattgtagatgccggatttctaccac 1231
Query: 330 ctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 ctttagtaaaattgcttgattaccaagaatcagaagaaattcaatgtcatgctgtttcaa 1171
Query: 390 ctttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 ctttaagaaacttggctgcttcatctgaaaaaaatagagcagagttcttccaatctggtg 1111
Query: 450 taattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaatta 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 taattgaaaaattcaagcaacttgccttgacatgtcccatcagcgttcaaagtgaaatta 1051
Query: 510 gtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaacaag 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 gtgcttgctttgctatcttggcactttcagataatactaaatatgatcttttgcaacaag 991
Query: 570 acgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggtaact 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 acgtactaaaagttttgatcccaatgacaatgtcccaggaccaagagatctctggtaact 931
Query: 630 ctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattggagt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctgctgctgctgtagcaaacttgatctctagggtcagcaatttagagaaaatattggagt 871
Query: 690 actggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagtgact 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 actggggtcaaccaaacgatggtatcaagggtttcttgatcagattcttgtctagtgact 811
Query: 750 tccctacctatgaacatattgctctatggaccattttacaactatttgaatgtcacaacg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tccctacctatgaacatattgctctatggaccattttacaactatttgaatgtcacaacg 751
Query: 810 aaaccatttacaagttaattaaagaagatcaaaaactcgtcaacggggtcaagaaaatcg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aaaccatttacaagttaattaaagaagatcaaaaactcgtcaacggggtcaagaaaatcg 691
Query: 870 ctgatgaaaactacgctgtggctagggaatacatgncagatgggacagataccaacattg 929
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 690 ctgatgaaaactacgctgtggctagggaatacatgcaagatggacaagataccaacattg 631
Query: 930 atcacaatggaaaattcgaacaatatagaa 959
|||||||||| |||||||||||||||||||
Sbjct: 630 atcacaatgg-aaattcgaacaatatagaa 602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7806
Number of Sequences: 1807
Number of extensions: 7806
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)