BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZH03RM1.SCF screened BAC_end
         (990 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1770                                                        1731   0.0  

>3x_Contig1770 
          Length = 29267

 Score = 1731 bits (873), Expect = 0.0
 Identities = 928/944 (98%), Gaps = 3/944 (0%)
 Strand = Plus / Plus

                                                                         
Query: 48    tctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattccacctc 107
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21524 tctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattccacctc 21583

                                                                         
Query: 108   ggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggacctcg 167
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21584 ggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggacctcg 21643

                                                                         
Query: 168   atgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttgtaagatcta 227
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21644 atgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaagatcta 21703

                                                                         
Query: 228   ttgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaagaatgt 287
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21704 ttgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaagaatgt 21763

                                                                         
Query: 288   ggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggtgcac 347
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21764 ggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggtgcac 21823

                                                                         
Query: 348   aatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcatcgga 407
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21824 aatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcatcgga 21883

                                                                         
Query: 408   gatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgttcat 467
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21884 gatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgttcat 21943

                                                                         
Query: 468   cccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgttctt 527
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21944 cccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgttctt 22003

                                                                         
Query: 528   atatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttggcta 587
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22004 atatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttggcta 22063

                                                                         
Query: 588   ttgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagccccattac 647
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22064 ttgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagccccattac 22123

                                                                         
Query: 648   caggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggcccca 707
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22124 caggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggcccca 22183

                                                                         
Query: 708   tataccagactcacggaattattcaatgtaaacaatnttattgtttccttagcaagaccc 767
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22184 tataccagactcacggaattattcaatgtaaacaattttattgtttccttagcaagaccc 22243

                                                                         
Query: 768   tatttggcaccattagcattgaacgacttanaacacgatattagaacgtctgagtactat 827
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 22244 tatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagtactat 22303

                                                                         
Query: 828   tactaccangagttcccatacatcgnatcca-gatcatattcaccaatgcaactatccca 886
             |||||| |   |||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 22304 tactacaagaggttcccatacatcg-atccaggatcatattcaccaatgcaactat-cca 22361

                                                                         
Query: 887   gggttaccaaattggaaccattagcattcaaatttaaataccacttggnaaggaagatga 946
              ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 22362 aggttaccaaattggaaccattagcattcaaatttaaataccacttggaaaggaagatga 22421

                                                         
Query: 947   agcatatactcactatggnaactaagcatagagtagagatcatg 990
             |||||||||||||||||| |   |||||||||||||||||||||
Sbjct: 22422 agcatatactcactatggaactaaagcatagagtagagatcatg 22465


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6069
Number of Sequences: 1807
Number of extensions: 6069
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)