BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH04FM1.SCF screened BAC_end
(1104 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 531 e-151
>3x_Contig1708
Length = 19451
Score = 531 bits (268), Expect = e-151
Identities = 290/296 (97%), Gaps = 1/296 (0%)
Strand = Plus / Minus
Query: 87 tgctagtttgttcaagttttctaaagatacaccacctaaagtatctctaatatgttccac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17811 tgctagtttgttcaagttttctaaagatacaccacctaaagtatctctaatatgttccac 17752
Query: 147 catcgattgtgcattatattccacaatagatttaccgataactttaatacatatatcctg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17751 catcgattgtgcattatattccacaatagatttaccgataactttaatacatatatcctg 17692
Query: 207 caatgatgaaatgagtgagtccttcttgtctaaaagattggcagccttctttcttctagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17691 caatgatgaaatgagtgagtccttcttgtctaaaagattggcagccttctttcttctagt 17632
Query: 267 tttcttctgttgatggcgagccttagctagttgcggagaagttttcttaccattagtcaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17631 tttcttctgttgatggcgagccttagctagttgcggagaagttttcttaccattagtcaa 17572
Query: 327 ggtcaacatccttttttttcgatcagaaacgcgttaattcttcttctttctcatca 382
||||||||||||||| |||||||||||||| || ||| ||||||||| |||||||
Sbjct: 17571 ggtcaacatccttttctttcgatcagaaac-cggcaatacttcttcttcctcatca 17517
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,879
Number of Sequences: 1807
Number of extensions: 11879
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 1104
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1088
effective length of database: 10,329,639
effective search space: 11238647232
effective search space used: 11238647232
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)