BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH04RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig520 1134 0.0
3x_Contig337 218 2e-56
>3x_Contig520
Length = 1382
Score = 1134 bits (572), Expect = 0.0
Identities = 639/653 (97%), Gaps = 7/653 (1%)
Strand = Plus / Minus
Query: 259 aaaccatggtgttctattcatttattctacgcaagatttccaacaagatatttggcgaca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1382 aaaccatggtgttctattcatttattctacgcaagatttccaacaagatatttggcgaca 1323
Query: 319 ttaagattggtgagggtgaggatccgtactatgaggaagttacttttgtgaagaagtcgt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1322 ttaagattggtgagggtgaggatccgtactatgaggaagttacttttgtgaagaagtcgt 1263
Query: 379 tttggactggaaatagccaagttgtgcataagaagctaaagaaagcaattccagattatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 tttggactggaaatagccaagttgtgcataagaagctaaagaaagcaattccagattatg 1203
Query: 439 tcccattaaatgacagaacagtgttgcaacgggttaggaaaagagcttacaggcttgata 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tcccattaaatgacagaacagtgttgcaacgggttaggaaaagagcttacaggcttgata 1143
Query: 499 tgatgtttaagatatttgggatgagagttggatggctcggtatcattggacttttgccag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 tgatgtttaagatatttgggatgagagttggatggctcggtatcattggacttttgccag 1083
Query: 559 tggtcggtgacctaatatgtttgtacttgtcatggacagtgttccatgaagcacagaaga 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 tggtcggtgacctaatatgtttgtacttgtcatggacagtgttccatgaagcacagaaga 1023
Query: 619 ttcaaggtggtttgcctgtgcccttgcaggcagagctcttgnggaacatctgtatcgatt 678
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1022 ttcaaggtggtttgcctgtgcccttgcaggcagagctcttggggaacatctgtatcgatt 963
Query: 679 tcctattagggttgattcccattgttggtgatatcgttgggattgcttatagggc-aatt 737
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 962 tcctattagggttgattcccattgttggtgatatcgttgggattgcttataaggcaaatt 903
Query: 738 ccagg-acacacttgcattggaacaatacttgagaaagaaatacggtggtgaaaccattg 796
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ccaggaacacacttgcattggaacaatacttgagaaagaaatacggtggtgaaaccattg 843
Query: 797 ccgcatctnctgtagaattgggttctgtcttcccaggaagggacccagacttgntaaaa- 855
|||||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct: 842 ccgcatctcctgtagaattaggttctgtctccccaggaagggacccagacttggtaaaag 783
Query: 856 gcttg-aacagacat-agcgagaag-cgtttgtgctaa-gtacatttattatc 904
||||| ||||||||| ||||||||| |||||||||||| ||||| ||||||||
Sbjct: 782 gcttgaaacagacataagcgagaagccgtttgtgctaatgtacaattattatc 730
>3x_Contig337
Length = 965
Score = 218 bits (110), Expect = 2e-56
Identities = 122/126 (96%)
Strand = Plus / Plus
Query: 49 tccctggctttaaaggctttgaaatagaaaaagtcatgataaagggacatggtttggtac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tccctggctttaaaggctttgaaatagaaaaagtcatgataaagggacatggtttggtac 899
Query: 109 ttcacaaacatgtttccattagtttttgggagtatttattattcagaaaagctagtcctg 168
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 900 ttcacaaacatgtttccattagtttttcggagtatttattattcacaaaacctagtcctc 959
Query: 169 gcatat 174
||||||
Sbjct: 960 gcatat 965
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7432
Number of Sequences: 1807
Number of extensions: 7432
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)