BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH07FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1620 0.0
>3x_Contig1803
Length = 52241
Score = 1620 bits (817), Expect = 0.0
Identities = 861/876 (98%), Gaps = 2/876 (0%)
Strand = Plus / Minus
Query: 86 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48818 attatttagaactgcgaatataacctcataatctggaacattctgaacggaatgagtgat 48759
Query: 146 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48758 taacggattaaggtgttctagcgagagttgtgaattgatgctccttttattattcacttt 48699
Query: 206 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48698 ctgttcttttcttgaaaagacacaaggtagaaacctgacgataattattaaagtccttta 48639
Query: 266 ccaactatagacagatgggtactctcacc-tcacctacggtttactgcaaattagagcat 324
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 48638 ccaactatagacagatgggtactctcaccctcacctacggtttactgcaaattagagcat 48579
Query: 325 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48578 tgtgcaagttcttcaacttcacttcatttataggatgctgttaaagacactatgacgaac 48519
Query: 385 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48518 tgatcatcaagataatggcaccgtacgcgatctaaccgtagttacgacaatagaggtttg 48459
Query: 445 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48458 cgttgacactacggaatttacgttcctgtgacctcgtggtagatagttacactgatgcag 48399
Query: 505 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48398 ttcgcattaatacaaaaaatgtatcacggacgcagcaagaagtttgcaatagaatgggaa 48339
Query: 565 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48338 aactcatgatgaaacgaacctcttataattctcttcatggttattttaggaatcaagtaa 48279
Query: 625 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48278 aacttgctctgcatcatgaccaacctcatccgccatattcttaagaaatgttgaacaaca 48219
Query: 685 gctattggagtccatggtgctcaattccacgaatttattatcatacctccattgtgagtg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48218 gctattggagtccatggtgctcaattccacgaatttattatcatacctccattgtgagtg 48159
Query: 745 tgagcaacatattatgatcactagaca-taattatttaataattattaacagtttttaag 803
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 48158 tgagcaacatattatgatcactagacattaattatttaataattattaacagtttttaag 48099
Query: 804 tggagttctttcttatgtcttctttnctaaaatttgntncgaacatcttttctggtgatt 863
||||||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||
Sbjct: 48098 tggagttctttcttatgtcttcttttctaaattttgtttcgaacatcttttctggtgatt 48039
Query: 864 taacacaagctacacagtctcggntaatccctttatatncctnctgnggcttgntattta 923
||||||||||||||||||||||| ||||||||| ||| ||| ||| |||||| ||||||
Sbjct: 48038 taacacaagctacacagtctcggttaatcccttattattccttctgtggcttgttattta 47979
Query: 924 ctctcatgcgtgatgtttatgcataaaattnatcat 959
||||||||||||||||||||||||||| || |||||
Sbjct: 47978 ctctcatgcgtgatgtttatgcataaattttatcat 47943
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5531
Number of Sequences: 1807
Number of extensions: 5531
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)