BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH07RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1385 1689 0.0
>3x_Contig1385
Length = 5361
Score = 1689 bits (852), Expect = 0.0
Identities = 900/911 (98%), Gaps = 4/911 (0%)
Strand = Plus / Plus
Query: 58 ggcttctttcaaatttggggcaacagcagaagatgcaatcactctaccaccattagtgta 117
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3932 ggcttctttcaaagttggggcaacagcagaagatgcaatcactctaccaccattagtgta 3991
Query: 118 cacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttggaatctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992 cacttttccgttatcagatttcgtgccagcatggaaaatgtaggtatcagttggaatctt 4051
Query: 178 cgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccaccagcagc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4052 cgaagaatcaaccgtaatctcgtctcccttcttgtatgactctgggtagccaccagcagc 4111
Query: 238 taaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatccaatct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4112 taaaactacagtagtagcatagcagttgtccttgattttgatgtcaactgaatccaatct 4171
Query: 298 atgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaatggcaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172 atgttcagcagctgctaaaaagacttgagccaaatcggtgtcttcagtcaacaatggcaa 4231
Query: 358 gactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttgggaccgtt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4232 gactgtttgcgtttctgggtcaccaaatctaacattgtactctaataccttgggaccgtt 4291
Query: 418 cttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctttctcat 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4292 cttagtcaagatgataccagtaaacaagacaccgacaaatggcaatttgtcctttctcat 4351
Query: 478 accatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttggagtagc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4352 accatcaatacttggtttgacaatagtcttatcaatttgttccaacaactttggagtagc 4411
Query: 538 aacaggtgccggagcataagcacccataccaccagtgttcaaaccggtgtcattttcacc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4412 aacaggtgccggagcataagcacccataccaccagtgttcaaaccggtgtcattttcacc 4471
Query: 598 aattctcttatggtcttgggctggtggtaggttaaagtatgagtaaccgtctgagattgt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4472 aattctcttatggtcttgggctggtggtaggttaaagtatgagtaaccgtctgagattgt 4531
Query: 658 caagatggagatttcatctccttccaagaattcttcaatgacaacgcttttaccagcgtc 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4532 caagatggagatttcatctccttccaagaattcttcaatgacaacgcttttaccagcgtc 4591
Query: 718 accgaattgtctttccaccatgatgattttcaaggcttcttgagcttcttcttgggtagt 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4592 accgaattgtctttccaccatgatgattttcaaggcttcttgagcttcttcttgggtagt 4651
Query: 778 agggatcaaaacaccctttcctgcagcgataccgtcagctttttataccacctgatnatc 837
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 4652 agggatcaaaacaccctttcctgcagcgataccgtcagcttttaataccacctgataatc 4711
Query: 838 tactttttcttagat-agctttagccgcttcgtagtcatcgaagttcgcataacgagcag 896
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4712 tactttttc-tagataagctttagccgcttcgtagtcatcgaagttcgcataacgagcag 4770
Query: 897 ttaggaatattgtgcttctgcatgaaatcctttggaaatgtttttggaacctttcaaaat 956
||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct: 4771 -taggaatattgtgcttctgcatgaaatcctttgagaatg-ttttggaaccttcaaaaat 4828
Query: 957 ggcagccttgg 967
|||||||||||
Sbjct: 4829 ggcagccttgg 4839
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6969
Number of Sequences: 1807
Number of extensions: 6969
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)