BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1564 0.0
>3x_Contig1303
Length = 8112
Score = 1564 bits (789), Expect = 0.0
Identities = 854/867 (98%), Gaps = 7/867 (0%)
Strand = Plus / Plus
Query: 87 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1773 ttaacaaagtagttagctataaggatgtttccttctctctttgttttctgttgtaatcat 1832
Query: 147 cagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttctt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1833 cagtccttttacaaaaataatggaaacttcaacaaaatttcaacttctcttcaatttctt 1892
Query: 207 acttttttttgcagaatgtgacctggaagacaaacagatatatgtgagagcattcttata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1893 acttttttttgcagaatgtgacctggaagacaaacagatatatgtgagagcattcttata 1952
Query: 267 tctatatagacatgtctgtaaaaattgagtcttccaaaagtgtttcacgactgggtatga 326
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1953 tctatatagacatgtctgtaaaaattgagtcttccaaaagtgtt-cacgactgggtatga 2011
Query: 327 tagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tagtgggacccgaatcaggttaggaggggctgtgtcatctatttttacatactatatgta 2071
Query: 387 tattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagaga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 tattatctatcatttacttatcgagccaggaatcttcctggttcaacgaaaatctagaga 2131
Query: 447 cgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacgc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 cgatcttttcattgatattagggaagattactgagatatcgttagtcttcatcgtaacgc 2191
Query: 507 acacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgacaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2192 acacttgcaggcttggaaacacatttcccttccacaattgttgaattgaaagtgtgacaa 2251
Query: 567 ggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcaggtg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 ggatattttcaagtgattctgcggtgtaattgtctttatatatcgatggcatttcaggtg 2311
Query: 627 gatataaaccgatggattttgctagaattggtcttatcacagagtatggtagtttatttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2312 gatataaaccgatggattttgctagaattggtcttatcacagagtatggtagtttatttg 2371
Query: 687 aattgcgcggtatacagtagtataggaaaatagatcgcanaagggatctgaacgttataa 746
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2372 aattgcgcggtatacagtagtataggaaaatagatcgcaaaagggatctgaacgttataa 2431
Query: 747 tgggtagcttttccaatagaacaatcaacattttagatgatttcagccacgattcgttct 806
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2432 tgggtagcttttccaatagaacaatcaacaatttagatgatttcagccacgattcgttct 2491
Query: 807 cggtaagccagaag-ttactctgntcaagtttccgtttttaacggc-atcac-agagctg 863
|| |||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct: 2492 cgtaaagccagaagtttactctgttcaagtttccgtttttaacggcaatcacaagagctg 2551
Query: 864 tgtatttctgtgctaggatagggtcccattgagat-acctgttgaaatct-gcaacttgc 921
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 2552 tgtatttctgtgctaggatagggtcccattgagataacttgttgaaatctggcaacttgc 2611
Query: 922 tgataatgata-cacatggaactaaaa 947
||||||||||| |||||||||||||||
Sbjct: 2612 tgataatgataccacatggaactaaaa 2638
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7340
Number of Sequences: 1807
Number of extensions: 7340
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)