BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH08RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig246 581 e-165
3x_Contig1243 214 2e-55
>3x_Contig246
Length = 1071
Score = 581 bits (293), Expect = e-165
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 47 aatgtgatatggtgctttctttgtaccccaggataagatacttggatattccgtgtagtt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aatgtgatatggtgctttctttgtaccccaggataagatacttggatattccgtgtagtt 837
Query: 107 cttctttcaatatatatcaggtcaaagtagtgtggccggctctgaccacttcgttctctt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 cttctttcaatatatatcaggtcaaagtagtgtggccggctctgaccacttcgttctctt 897
Query: 167 tttttcctctctcctgtgcttttgtacgaattatgttttacaagttgactctactacatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tttttcctctctcctgtgcttttgtacgaattatgttttacaagttgactctactacatc 957
Query: 227 ctaaactgcaactttttagtcaaacgatatggttttctttcttttctgacagcgaataga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 ctaaactgcaactttttagtcaaacgatatggttttctttcttttctgacagcgaataga 1017
Query: 287 gtattatatgtactgtatgtatgtatctataggctcatcggtggctttgtgtc 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gtattatatgtactgtatgtatgtatctataggctcatcggtggctttgtgtc 1070
>3x_Contig1243
Length = 5571
Score = 214 bits (108), Expect = 2e-55
Identities = 178/188 (94%), Gaps = 10/188 (5%)
Strand = Plus / Plus
Query: 694 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 attgctagttccagttcaggtcccgcgtcctgcgtaacgaaatttggtctcgaggttttt 64
Query: 754 ccggttgatcccct-ccccgc-tttttttttcacgaaac-tctctc-attatcgtcgtca 809
|||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 65 ccggttgatcccctcccccgcttttttttttcacgaaacttctctcaattatcgtcgtca 124
Query: 810 taga-aacgtggtttt-tctccagtaaagg-ataaac-gggaagctct-aacaga-ggta 863
|||| ||||||||||| ||||||||||||| |||||| |||||||||| |||||| ||||
Sbjct: 125 tagagaacgtggttttctctccagtaaaggaataaacggggaagctctaaacagagggta 184
Query: 864 cattcatt 871
||||||||
Sbjct: 185 cattcatt 192
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6703
Number of Sequences: 1807
Number of extensions: 6703
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)