BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH10FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig891 1592 0.0
>3x_Contig891
Length = 5018
Score = 1592 bits (803), Expect = 0.0
Identities = 856/867 (98%), Gaps = 5/867 (0%)
Strand = Plus / Minus
Query: 85 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 3565
Query: 145 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 3505
Query: 205 agggatcctgaatcattagttccgattacttaccttttcatccataaattagggcccgat 264
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3504 agggatcctgaatcattagttccgtttacttaccttttcatccataaattagggcccgat 3445
Query: 265 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 3385
Query: 325 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 3325
Query: 385 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 3265
Query: 445 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 3205
Query: 505 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 3145
Query: 565 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 3085
Query: 625 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 3025
Query: 685 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 2965
Query: 745 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcaaattg 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcaaattg 2905
Query: 805 aggccggggattcccttac-accgatgcttgcgaaacccac-aaatcaatcagcgaggtg 862
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2904 aggccggggattcccttacaaccgatgcttgcgaaacccacaaaatcaatcagcgaggtg 2845
Query: 863 ttggacaggttcccaggcacttag-ttacctgtgagtac-aatatgacggtgaaagagca 920
||||||||||||| |||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 2844 ttggacaggttccagggcactaagtttacctgtgagtacaaatatgacggtgaaagagca 2785
Query: 921 c-agtgcatttgtgttaggatggatct 946
| ||||||||||||| ||||||||||
Sbjct: 2784 caagtgcatttgtgtagggatggatct 2758
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5324
Number of Sequences: 1807
Number of extensions: 5324
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)