BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC22ZH10RM1.SCF screened BAC_end
         (963 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1327                                                        1665   0.0  

>3x_Contig1327 
          Length = 7237

 Score = 1665 bits (840), Expect = 0.0
 Identities = 902/918 (98%), Gaps = 5/918 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   tttgatgatttgattatcctctggatggtacaattcgtatgctaattggaagaacgtgga 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 tttgatgatttgattatcctctggatggtacaattcgtatgctaattggaagaacgtgga 1744

                                                                        
Query: 109  atacgcaccggcagagatcccaccaacggaaattttatctgggttaccaccaaagtattt 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 atacgcaccggcagagatcccaccaacggaaattttatctgggttaccaccaaagtattt 1684

                                                                        
Query: 169  gatgtacttgtaagtccattcaatggccaaacgttgatcccagaatccaaaattggaaga 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 gatgtacttgtaagtccattcaatggccaaacgttgatcccagaatccaaaattggaaga 1624

                                                                        
Query: 229  agcttcatcttcttccaagagttctttaccagagaggaacccaaacatgtttaacctata 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 agcttcatcttcttccaagagttctttaccagagaggaacccaaacatgtttaacctata 1564

                                                                        
Query: 289  acctggtgttactagaatgtatttctgggtaaattcttcatcgtcgaacatctcattggt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 acctggtgttactagaatgtatttctgggtaaattcttcatcgtcgaacatctcattggt 1504

                                                                        
Query: 349  attgaagaattcgctgtaaggagaagagtattgcaaccatccaccatgaatatagactag 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 attgaagaattcgctgtaaggagaagagtattgcaaccatccaccatgaatatagactag 1444

                                                                        
Query: 409  tacaggccaaccatcggattccttatatttatcacttgagggaacccatatgttcaactt 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 tacaggccaaccatcggattccttatatttatcacttgagggaacccatatgttcaactt 1384

                                                                        
Query: 469  gttaatgttctcatctgatggggacttagtgtacctgaatgcagggttaggaacacttgg 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 gttaatgttctcatctgatggggacttagtgtacctgaatgcagggttaggaacacttgg 1324

                                                                        
Query: 529  ttgagggcatttcaacccaaattccttatagtcacctgtataatcgaaatcatctgctaa 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ttgagggcatttcaacccaaattccttatagtcacctgtataatcgaaatcatctgctaa 1264

                                                                        
Query: 589  tgggaccggcctcttaaaccgattttccttggtgaaaggttccgcatacggaatctgagc 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 tgggaccggcctcttaaaccgattttccttggtgaaaggttccgcatacggaatctgagc 1204

                                                                        
Query: 649  gaacctgtgtgttgtgacattgtttgtccttggtgatttgaaagtgtaacctgtcaaagt 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 gaacctgtgtgttgtgacattgtttgtccttggtgatttgaaagtgtaacctgtcaaagt 1144

                                                                        
Query: 709  tccttgacctgngattgaaatagggaaaggcgtggtaccttcagtagaaacaacttgtcc 768
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 tccttgacctgggattgaaatagggaaaggcgtggtaccttcagtagaaacaacttgtcc 1084

                                                                        
Query: 769  catgctgntgntgcgttgacttccttgngtattctgttacttgccttatacttcttaaga 828
            ||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1083 catgctgttgttgcgttgacttccttgtgtattctgttacttgccttatacttcttaaga 1024

                                                                        
Query: 829  tcatcaaatac-acttggtaatagctncaattgtcacgcttat-tatatatatgtgggcc 886
            ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||| | 
Sbjct: 1023 tcatc-aatacaacttggtaatagctccaattgtcacgcttatatatatatatgtggcct 965

                                                                        
Query: 887  tatgaaaatgcagcangggttcagtatacttacccatatcttaaatgccagac-aagcac 945
             ||||||||||||||  |||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 964  aatgaaaatgcagcaatggttcagtatac-tacccatatcttaaatggcagacaaagcac 906

                              
Query: 946  tcaaatcaaacaacagac 963
            ||||||||||||||||||
Sbjct: 905  tcaaatcaaacaacagac 888


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6843
Number of Sequences: 1807
Number of extensions: 6843
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)