BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH11FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1484 1566 0.0
>3x_Contig1484
Length = 9345
Score = 1566 bits (790), Expect = 0.0
Identities = 830/839 (98%), Gaps = 4/839 (0%)
Strand = Plus / Minus
Query: 88 cccctacctgttctaaaagcacatacatcttttcatctgagaaaatacttcccaagtcca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 cccctacctgttctaaaagcacatacatcttttcatctgagaaaatacttcccaagtcca 5302
Query: 148 aaatcaatgatgtagcttcagtgaccttactgtaacttatatcatctttcttcagtaaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5301 aaatcaatgatgtagcttcagtgaccttactgtaacttatatcatctttcttcagtaaaa 5242
Query: 208 attgaacagttgctagtgtcaagttgttaaacgatggttcaatttgtctgattcttttct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 attgaacagttgctagtgtcaagttgttaaacgatggttcaatttgtctgattcttttct 5182
Query: 268 gatagtctttttccagatgtaataaggcggttatcgaatcgaatgatggaccttgtaaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 gatagtctttttccagatgtaataaggcggttatcgaatcgaatgatggaccttgtaaat 5122
Query: 328 agtaacctagggttcctaatgcattaatgtaatctcctttatgtatatggtgtaagacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5121 agtaacctagggttcctaatgcattaatgtaatctcctttatgtatatggtgtaagacaa 5062
Query: 388 tatcggaccatgagttaattttccccaccattaaactgtaattggtgagcacaacaatcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 tatcggaccatgagttaattttccccaccattaaactgtaattggtgagcacaacaatcg 5002
Query: 448 tgttatttaacgtagcgaaatggttctcagattctggaaccatcagttcatgaataagta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 tgttatttaacgtagcgaaatggttctcagattctggaaccatcagttcatgaataagta 4942
Query: 508 agtcaatactagtgagtacaggatcctcatcggtatcaacactacctatgtttaaaacga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 agtcaatactagtgagtacaggatcctcatcggtatcaacactacctatgtttaaaacga 4882
Query: 568 gaagcttacttgacaagagcaaaatagtcaaaatgttatttgtgagccaggcaactttac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 gaagcttacttgacaagagcaaaatagtcaaaatgttatttgtgagccaggcaactttac 4822
Query: 628 aaatgcattcaggagcttcgtacgtccattgtaaagtcggaaacctgatatcgacaaggc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 aaatgcattcaggagcttcgtacgtccattgtaaagtcggaaacctgatatcgacaaggc 4762
Query: 688 tcaactggttatctacagagaaggcaacctgatttggattgacgtcattccaggagatat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4761 tcaactggttatctacagagaaggcaacctgatttggattgacgtcattccaggagatat 4702
Query: 748 atccaaaagtggccgagtttttgtgtgacaattcaatgagccgantagntgataaagttg 807
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 4701 atccaaaagtggccgagtttttgtgtgacaattcaatgagccgataagttgataaagttg 4642
Query: 808 gcgatgaccatgatatgactgcgaaggatcgattagataaaactgctaacangatg-tca 866
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 4641 gcgatgacaatgatatgactgcgaaggatcgattagataaaactgctaaca-gatgttca 4583
Query: 867 gcatcataatcttcacccgntgcttcgaatgcgcgtagtcaataaaagggtttatcatt 925
||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 4582 gcatcataatcttca-ccgttgcttcgaatgcgcgtagtcaat-aaagggtttatcatt 4526
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5615
Number of Sequences: 1807
Number of extensions: 5615
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)