BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH11RM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1546 0.0
>3x_Contig1497
Length = 11582
Score = 1546 bits (780), Expect = 0.0
Identities = 832/846 (98%), Gaps = 3/846 (0%)
Strand = Plus / Minus
Query: 48 tgtacgttggcagagctcaaaagaagtacgaacgtgctgaagaattgaagaaacaatacg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10686 tgtacgttggcagagctcaaaagaagtacgaacgtgctgaagaattgaagaaacaatacg 10627
Query: 108 aacaataccgtttggaaaaattggctaagttccaaggtgttaacttgttcatcaagaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10626 aacaataccgtttggaaaaattggctaagttccaaggtgttaacttgttcatcaagaact 10567
Query: 168 tggacgattccatcgatgacgaaaaattgaaggaagaattcgccccatacggtaccatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10566 tggacgattccatcgatgacgaaaaattgaaggaagaattcgccccatacggtaccatca 10507
Query: 228 cctctgctagagtcatgagagaccaagagggtaactctaagggtttcggtttcgtttgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10506 cctctgctagagtcatgagagaccaagagggtaactctaagggtttcggtttcgtttgtt 10447
Query: 288 tctcttctccagaagaagctaccaaggctatgaccgaaaagaaccaacaaattgttgccg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10446 tctcttctccagaagaagctaccaaggctatgaccgaaaagaaccaacaaattgttgccg 10387
Query: 348 gtaagccattgtacgttgccattgctcaaagaaaggatgtcagaagatcccaattggctc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10386 gtaagccattgtacgttgccattgctcaaagaaaggatgtcagaagatcccaattggctc 10327
Query: 408 aacaaattcaagccagaaaccaaatcagattccaacaacagcaacaacaacaagctgctg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10326 aacaaattcaagccagaaaccaaatcagattccaacaacagcaacaacaacaagctgctg 10267
Query: 468 ccgctgctgctggtatgccaggccaatacatgccacaaatgttctatggtgttatggccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10266 ccgctgctgctggtatgccaggccaatacatgccacaaatgttctatggtgttatggccc 10207
Query: 528 caagaggtttcccaggtccaaacccaggtatgaacggcccaatgggtgccggtattccaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10206 caagaggtttcccaggtccaaacccaggtatgaacggcccaatgggtgccggtattccaa 10147
Query: 588 agaacggtatggtcccaccaccacaacaatttgctggtagaccaaacggtccaatgtacc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10146 agaacggtatggtcccaccaccacaacaatttgctggtagaccaaacggtccaatgtacc 10087
Query: 648 aaggtatgccacctcaaaaccaattcccaagacaccaacaacaacactacatccaacaac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10086 aaggtatgccacctcaaaaccaattcccaagacaccaacaacaacactacatccaacaac 10027
Query: 708 aaaagcaaagacaagccttgggtgaacaattgtacaagaaggtcagtgccaagattgacg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10026 aaaagcaaagacaagccttgggtgaacaattgtacaagaaggtcagtgccaagattgacg 9967
Query: 768 acgaaaacgccgctgggtagatcaccggtatgatcttggatctaccaccacnagcagtca 827
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 9966 acgaaaacgccgctggtaagatcaccggtatgatcttggatctaccaccacagcaagtca 9907
Query: 828 ttcaattgttgngacacgacgaacaatttg-acagcaattcc-agaagcc-tagctgctt 884
| ||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 9906 tccaattgttggacaacgacgaacaatttgaacagcaattccaagaagccttagctgctt 9847
Query: 885 acgaaa 890
||||||
Sbjct: 9846 acgaaa 9841
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8584
Number of Sequences: 1807
Number of extensions: 8584
Number of successful extensions: 381
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)