BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH12FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 1546 0.0
>3x_Contig1393
Length = 6980
Score = 1546 bits (780), Expect = 0.0
Identities = 847/865 (97%), Gaps = 4/865 (0%)
Strand = Plus / Minus
Query: 86 caagcgcatatctgtctttaacaacaaaggaaaacactaggttaaatgcgcaactttctc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6334 caagcgcatatctgtctttaacaacaaaggaaaacactaggttaaatgcgcaactttctc 6275
Query: 146 acgaaagtttgagagaaaccgccagcaaacaacaagcacaaaatcaataccgaagacagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6274 acgaaagtttgagagaaaccgccagcaaacaacaagcacaaaatcaataccgaagacagc 6215
Query: 206 aacagcaaaaccagcagcctctagctcctaagagaaattctcaaagaccgcaatcaatga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6214 aacagcaaaaccagcagcctctagctcctaagagaaattctcaaagaccgcaatcaatga 6155
Query: 266 tggctcaaagagttaatggtgatagacgttctttcatgcagaataattccggtgttgctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6154 tggctcaaagagttaatggtgatagacgttctttcatgcagaataattccggtgttgctt 6095
Query: 326 cccctcgcgatgctagacctagaagtgtcgtagggaagccgtccaacaatgccaaatcgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6094 cccctcgcgatgctagacctagaagtgtcgtagggaagccgtccaacaatgccaaatcgc 6035
Query: 386 aacaaaatagtggactttacccaagggaacctcctcaaaagcgttcaagcttcgaaaagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6034 aacaaaatagtggactttacccaagggaacctcctcaaaagcgttcaagcttcgaaaagc 5975
Query: 446 aaagaccgatgtccaccaaccttggatttaaaaacttatcgttgagagaggatccgcaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5974 aaagaccgatgtccaccaaccttggatttaaaaacttatcgttgagagaggatccgcaac 5915
Query: 506 tcactgaccagtacgagcagcctcaagccccattccaaccacatccacaacaaagacaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5914 tcactgaccagtacgagcagcctcaagccccattccaaccacatccacaacaaagacaat 5855
Query: 566 ctagaaactcaacccctgttaaaagtggagtaacgtacaatggtgtacagtatgtctccg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5854 ctagaaactcaacccctgttaaaagtggagtaacgtacaatggtgtacagtatgtctccg 5795
Query: 626 gatcagtaccactgcctgcttccaataccaacaataacaaaccaaaagcgtcgtcaattg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5794 gatcagtaccactgcctgcttccaataccaacaataacaaaccaaaagcgtcgtcaattg 5735
Query: 686 ctcatggattcaaatcaagatttgccgactctgattcggacgaagaatccgcanacctac 745
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5734 ctcatggattcaaatcaagatttgccgactctgattcggacgaagaatccgcaaacctac 5675
Query: 746 agttcagcaaccaagggagtcgatctactcaagtttcaagcgaatatgaaccggnacctt 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5674 agttcagcaaccaagggagtcgatctactcaagtttcaagcgaatatgaaccggcacctc 5615
Query: 806 ctccacccgcgccatacaattctcatgctactttgagacctcagccagagcctttcaata 865
|||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct: 5614 ctccacccgcgccatacaatcctcatgctactttgagacctcagccagagcctcaaataa 5555
Query: 866 acgccactcacactactgagaagaaaaag-agaac-accncagcagtaaactaaaaaagc 923
|||| |||||||||||||||||||||||| ||||| || ||||||||||||||| ||||
Sbjct: 5554 acgcaactcacactactgagaagaaaaagaagaacaacttcagcagtaaactaaagaagc 5495
Query: 924 tttt-ggtaac-aggaacactgaaa 946
|||| |||||| || ||||||||||
Sbjct: 5494 ttttcggtaacaagaaacactgaaa 5470
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5650
Number of Sequences: 1807
Number of extensions: 5650
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)