BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC22ZH12RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1679 0.0
>3x_Contig1794
Length = 36744
Score = 1679 bits (847), Expect = 0.0
Identities = 887/898 (98%), Gaps = 2/898 (0%)
Strand = Plus / Plus
Query: 43 gcttgtttctcattttcgaacttctcccagtagggataatctgtttcaaactccaaatcc 102
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 23189 gcttgtttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatcc 23248
Query: 103 aaacctttgtatctccaagcatgtagatatagctctaacgattctggagttggatctttt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23249 aaacctttgtatctccaagcatgtagatatagctctaacgattctggagttggatctttt 23308
Query: 163 ggcatttcttcgtcgcattcaggacatcgttcttgattttcattcaattgancct-gact 221
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 23309 ggcatttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccagaca 23368
Query: 222 tcatccagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23369 tcatccagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttga 23428
Query: 282 gtccaatctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaagg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23429 gtccaatctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaagg 23488
Query: 342 ttataaaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23489 ttataaaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttga 23548
Query: 402 tgtgttcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23549 tgtgttcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtat 23608
Query: 462 tccattaattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23609 tccattaattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaatt 23668
Query: 522 ttcaagtcacaggtatagattggggatttatcaactgcagtttcaggaaattttcctttt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23669 ttcaagtcacaggtatagattggggatttatcaactgcagtttcaggaaattttcctttt 23728
Query: 582 actctagctagataatatttcttcatatcacgatctcttatcttagattgaactctgtta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23729 actctagctagataatatttcttcatatcacgatctcttatcttagattgaactctgtta 23788
Query: 642 gcatcgatgggatttttggccagaataagtaaaccagaagtgatcttatccaaacgataa 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23789 gcatcgatgggatttttggccagaataagtaaaccagaagtgatcttatccaaacgataa 23848
Query: 702 catgggtgtactggatatcccaaagaatctttcaacagctcggttaaagtattcttataa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23849 catgggtgtactggatatcccaaagaatctttcaacagctcggttaaagtattcttataa 23908
Query: 762 aaataggccgttgggtgtaccggaataccattggggttattaatgactagtaattgttca 821
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 23909 aaataggccgttgggtgtaccggaataccattgggtttattaatgactagtaattgttca 23968
Query: 822 tcttgatgcacaattggaattcccataatgtgcttctcgtcacaaattggttccccccag 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23969 tcttgatgcacaattggaattcccataatgtgcttctcgtcacaaattggttccccccag 24028
Query: 882 tttttgactgggagttcatggttgtgttggttaggtgaatagaatatctttatcctta 939
||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 24029 tttttgactggaggttcatggttgtgttgg-taggtgagtagaatatctttattctta 24085
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6971
Number of Sequences: 1807
Number of extensions: 6971
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)