BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC23ZA01FM1.SCF screened BAC_end (916 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1175 236 6e-62 >3x_Contig1175 Length = 4107 Score = 236 bits (119), Expect = 6e-62 Identities = 176/187 (94%), Gaps = 6/187 (3%) Strand = Plus / Plus Query: 627 tgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcaggt 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 tgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcaggt 61 Query: 687 atgggacgtttccgacattgcaaagaaggctgtttaaggt-taaagtgtacttattaaaa 745 ||||||||||| ||||||||||||||||||||| ||| || |||||||||||||| |||| Sbjct: 62 atgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaaa 121 Query: 746 gatagactttttttggggcggtattcggctggtttgaaaccggcagtaattctcctttct 805 |||||||||||||| |||||||| ||||||||| || ||||||||| |||||| |||||| Sbjct: 122 gatagacttttttt-gggcggta-tcggctggtatg-aaccggcag-aattct-ctttct 176 Query: 806 tagtctt 812 ||||||| Sbjct: 177 tagtctt 183 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,387 Number of Sequences: 1807 Number of extensions: 13387 Number of successful extensions: 203 Number of sequences better than 1.0e-20: 1 length of query: 916 length of database: 10,358,551 effective HSP length: 16 effective length of query: 900 effective length of database: 10,329,639 effective search space: 9296675100 effective search space used: 9296675100 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)