BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC23ZA01RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1294                                                        1098   0.0  

>3x_Contig1294 
          Length = 6938

 Score = 1098 bits (554), Expect = 0.0
 Identities = 584/594 (98%)
 Strand = Plus / Plus

                                                                        
Query: 50   catcgatgatgatgactgtaagaggatgcatactgagaacatggttcgcaaatcctcaaa 109
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 catcgatgatgatgactataagaggatgcatactgagaacatggttcgcaaatcctcaaa 1132

                                                                        
Query: 110  gtcaaaacaaattttgatttctagacctccaccattgttatctgttcacatcaaccggtc 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1133 gtcaaaacaaattttgatttctagacctccaccattgttatctgttcacatcaaccggtc 1192

                                                                        
Query: 170  cgtttttgaccctcgcacttatatgatcaggaaaaataactcaagagttatattcaaaag 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 cgtttttgaccctcgcacttatatgatcaggaaaaataactcaagagttatattcaaaag 1252

                                                                        
Query: 230  caaattgaatctatcaccttggtgttgcaattatgataagattaatcttgatgcacgtct 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1253 caaattgaatctatcaccttggtgttgcaattatgataagattaatcttgatgcacgtct 1312

                                                                        
Query: 290  tccgatgtccaagaagcaagagaactggcacgaatcatccgaagatgacaataatggaac 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1313 tccgatgtccaagaagcaagagaactggcacgaatcatccgaagatgacaataatggaac 1372

                                                                        
Query: 350  tgaatactacaataagttgcatcgcagatttgaaaaagaatttgaagacagcgatgaaga 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 tgaatactacaataagttgcatcgcagatttgaaaaagaatttgaagacagcgatgaaga 1432

                                                                        
Query: 410  ggaggatggaagtgataatggtcaaggaatgttcaatggatcttcaagaatggtggaaga 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 ggaggatggaagtgataatggtcaaggaatgttcaatggatcttcaagaatggtggaaga 1492

                                                                        
Query: 470  gcatgatgttttgaatggtgaattaagttcggcatcggtgtcatcattcgaagacgatat 529
            ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 1493 gcatgatgttttgaatggtgaattaagttcggcatcgttgtcatcatccgaagacgatat 1552

                                                                        
Query: 530  tgctgaagtcgaagaggtggagtttgatgccctttggaatacaatcgtaataaagactgc 589
            |||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||
Sbjct: 1553 tgctgaagtcgaagaggtggagttagatgcccttggaaatacaatcgtaaaaaagactgc 1612

                                                                  
Query: 590  caaaaaaccatttttaggtggcaattaagatgtgtctatctccagaggtaacct 643
            |||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct: 1613 caaaaaaccattattaggtggcaatcaagatgtgtctatctccagaggaaacct 1666


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,298
Number of Sequences: 1807
Number of extensions: 14298
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)