BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA02FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 922 0.0
>3x_Contig1515
Length = 8855
Score = 922 bits (465), Expect = 0.0
Identities = 479/481 (99%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 228 ccccctaaggtgatagatcatgacgctcaaaatcgtatagccaaactcactgcagaacgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3659 ccccctaaggtgatagatcatgacgctcaaaatcgtatagccaaactcactgcagaacgg 3600
Query: 288 gcatggcagatatcttctgagcctctcaaatctgttcccatgaatataattatgtcatat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599 gcatggcagatatcttctgagcctctcaaatctgttcccatgaatataattatgtcatat 3540
Query: 348 atgtctggtaacagcttgcaaattattcctataatgactgctgtgatgttggtctcaaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 atgtctggtaacagcttgcaaattattcctataatgactgctgtgatgttggtctcaaat 3480
Query: 408 cccatcaaaagtatcttaggagttaagtcaaaatttcaacatttaatcaacaaagataat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 cccatcaaaagtatcttaggagttaagtcaaaatttcaacatttaatcaacaaagataat 3420
Query: 468 gatgtaaccccgcctgtagttgcagccatgattatgtacgtgatataccaattaatcctc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 gatgtaaccccgcctgtagttgcagccatgattatgtacgtgatataccaattaatcctc 3360
Query: 528 atgggaataggtttgcataagttgaattcaatgggattgttcccaactacgtcaagtgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 atgggaataggtttgcataagttgaattcaatgggattgttcccaactacgtcaagtgat 3300
Query: 588 tggcttgcttggcaacaaccaacggagtatttataccgtacgttaagtatttaattgaat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 tggcttgcttggcaacaaccaacggagtatttataccgtacgttaagtatttaattgaat 3240
Query: 648 gtagcgaaattaatacattatacaaaagggtctattttgctagtattgcttttgggtaga 707
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 3239 gtagcgaaattaatacattatacaaaagggtcta-tttgctagtattgc-tttgggtaga 3182
Query: 708 a 708
|
Sbjct: 3181 a 3181
Score = 260 bits (131), Expect = 4e-69
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 87 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 caagagggaattatgtcagaagatatcccacaatgggcgaaagatttgaaagttgacaaa 3741
Query: 147 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3740 gtgatgaggcgaaatagtgtcaatggtggtaaattgccggatccgtttggaataaagaaa 3681
Query: 207 ctagagatcga 217
|||||||||||
Sbjct: 3680 ctagagatcga 3670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8465
Number of Sequences: 1807
Number of extensions: 8465
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)