BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA02RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1372 0.0
3x_Contig1805 517 e-146
>3x_Contig1803
Length = 52241
Score = 1372 bits (692), Expect = 0.0
Identities = 818/848 (96%), Gaps = 9/848 (1%)
Strand = Plus / Minus
Query: 47 tgaagaacacaaaactggatacatctctgtaaatgagaagaacgaatgcagagcatgcga 106
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51280 tgaagaacaaaaaactggatacatctctgtaaatgagaagaacgaatgcagagcatgcga 51221
Query: 107 ttgatccttttatagggtatgagaaatgctatgatgctagcatggtgttagtagatcggc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51220 ttgatccttttatagggtatgagaaatgctatgatgctagcatggtgttagtagatcggc 51161
Query: 167 agtgtgctggtgatgtcagtaatgcaaaataacataacatgtaatacttattcgttgcag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51160 agtgtgctggtgatgtcagtaatgcaaaataacataacatgtaatacttattcgttgcag 51101
Query: 227 ctatctttttttgttagacttatttgttactaacaggaccattgtactccacttcattgt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51100 ctatctttttttgttagacttatttgttactaacaggaccattgtactccacttcattgt 51041
Query: 287 agtcccagtagaaagtaagttcggtgatgttagacacctgttggatttcgcaactggaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51040 agtcccagtagaaagtaagttcggtgatgttagacacctgttggatttcgcaactggaaa 50981
Query: 347 catagtcaattccattcaatctgtctgcgatgtaatcgtcaaagtcctcgataggacagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50980 catagtcaattccattcaatctgtctgcgatgtaatcgtcaaagtcctcgataggacagg 50921
Query: 407 agaaccctggacctgaggtgcaacctggaactggaataacaacatcgttaacaatgtaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50920 agaaccctggacctgaggtgcaacctggaactggaataacaacatcgttaacaatgtaac 50861
Query: 467 gaacataagaggaatttctacattttaatttttcagtgaagatacgacctcccataggcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50860 gaacataagaggaatttctacattttaatttttcagtgaagatacgacctcccataggcg 50801
Query: 527 tcacccagcttagcttctggatatcctggaactcaacctgttccagagagtattcagtga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50800 tcacccagcttagcttctggatatcctggaactcaacctgttccagagagtattcagtga 50741
Query: 587 caccattgtcgaaaaggccaagtgccgaaacgaattgttgaatatcggtatcatgagaaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50740 caccattgtcgaaaaggccaagtgccgaaacgaattgttgaatatcggtatcatgagaaa 50681
Query: 647 aaagaagccagaccttattatccaaatcatcagcttgtgtgaaaagattgt-agaagcgt 705
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50680 aagaaagccagaccttattatccaaatcatcagcttgtgtgaaaagattgtaagaagcgt 50621
Query: 706 tgagtaacactgaacccatttggttaaccagagggttgcctaaacctctgccatagaaaa 765
|||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||
Sbjct: 50620 tgagtaacactgaaccaattggtttaaccagagggttgcctaaacctctgccatag-aaa 50562
Query: 766 ttggttacattagaaatagtccgagttaggcatttaaattatttgcgctcaaagaaatat 825
|| || |||| || |||||| |||| |||||| | |||| | ||||||||||||| ||
Sbjct: 50561 tttgtaacatcag-aatagtacgag-taggcaatcaaatca-ttgcgctcaaagagat-c 50506
Query: 826 acaaacggtaaaacctccccttaaaatttgtttacaaatgcacaccaattctaccaacgg 885
|||||||||| || || ||||||| ||||| ||||||||||||||| | ||||||||| |
Sbjct: 50505 acaaacggtagaa-ctacccttaatatttg-ttacaaatgcacacc-agtctaccaacag 50449
Query: 886 ttttatgt 893
|| |||||
Sbjct: 50448 ttctatgt 50441
>3x_Contig1805
Length = 19369
Score = 517 bits (261), Expect = e-146
Identities = 427/481 (88%), Gaps = 1/481 (0%)
Strand = Plus / Minus
Query: 242 agacttatttgttactaacaggaccattgtactccacttcattgtagtcccagtagaaag 301
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11136 agacttacttgttactaacgggaccgttgtactccacttcattgtagtcccagtagaaag 11077
Query: 302 taagttcggtgatgttagacacctgttggatttcgcaactggaaacatagtcaattccat 361
||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct: 11076 taagttcggtggtgttagacacctgttgaacttcgcaactggaaacatagtcaatgccat 11017
Query: 362 tcaatctgtctgcgatgtaatcgtcaaagtcctcgataggacaggagaaccctggacctg 421
||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11016 tcaatctgtttgtgatgtaatcgtcaaagtcctcgataggacaggaaaaccctggacctg 10957
Query: 422 aggtgcaacctggaactggaataacaacatcgttaacaatgtaacgaacataagaggaat 481
|||||||||||||||||||||||| |||||||| | ||| |||||||||||||||| ||
Sbjct: 10956 aggtgcaacctggaactggaataatcacatcgttgataatataacgaacataagaggcat 10897
Query: 482 ttctacattttaatttttcagtgaagatacgacctcccataggcgtcacccagcttagct 541
||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 10896 ttccacacttcaatttttcagtgaagatacgacctcccataggcgtcacccaacttagtt 10837
Query: 542 tctggatatcctggaactcaacctgttccagagagtattcagtgacaccattgtcgaaaa 601
|||||| | ||||| ||||| || || ||||| || |||||||| || ||||||| |
Sbjct: 10836 gctggatgttttggaaatcaacttgatcgagagaatactcagtgacgccgttgtcgatca 10777
Query: 602 ggccaagtgccgaaacgaattgttgaatatcggtatcatgagaaaaaagaagccagacct 661
||||| || |||| ||||||||| |||||||| |||||||| || |||||||||||
Sbjct: 10776 aaccaagcgctgaaatgaattgttggatatcggtgtcatgagagaatgaaagccagacct 10717
Query: 662 tattatccaaatcatcagcttgtgtgaaaagattgt-agaagcgttgagtaacactgaac 720
| || ||||| |||||||||||||| |||||||||| ||| ||||||| ||||||||||
Sbjct: 10716 tgttgtccaattcatcagcttgtgtcaaaagattgtaagaggcgttgaccaacactgaac 10657
Query: 721 c 721
|
Sbjct: 10656 c 10656
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6679
Number of Sequences: 1807
Number of extensions: 6679
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)