BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA03FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1245 1544 0.0
>3x_Contig1245
Length = 6017
Score = 1544 bits (779), Expect = 0.0
Identities = 801/806 (99%), Gaps = 2/806 (0%)
Strand = Plus / Plus
Query: 86 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 4522
Query: 146 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 4582
Query: 206 cggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgattac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 cggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgattac 4642
Query: 266 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 4702
Query: 326 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 4762
Query: 386 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 4822
Query: 446 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 4882
Query: 506 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 4942
Query: 566 cggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtgatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 cggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtgatg 5002
Query: 626 tgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaatgc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 tgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaatgc 5062
Query: 686 ttccttcttttttttcttgaagagccattgatgaccccgtgcaacgcgtacattttttat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 ttccttcttttttttcttgaagagccattgatgaccccgtgcaacgcgtacattttttat 5122
Query: 746 ggaaaattaanagatggaaaatcggaatgtaatcggtgcatgattaagcaatgataatga 805
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 ggaaaattaaaagatggaaaatcggaatgtaatcggtgcatgattaagcaatgataatga 5182
Query: 806 gctacagcattgaacaaag-aagagggttcaagaagatggatttgcgtgtacgttaacgg 864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5183 gctacagcattgaacaaagaaagagggttcaagaagatggatttgcgtgtacgtt-acgg 5241
Query: 865 cttctgatatttcttcaaagcccctg 890
||||||||||| |||||||||||||
Sbjct: 5242 cttctgatattctttcaaagcccctg 5267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7257
Number of Sequences: 1807
Number of extensions: 7257
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)