BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA03RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1261 0.0
>3x_Contig1485
Length = 9830
Score = 1261 bits (636), Expect = 0.0
Identities = 704/718 (98%), Gaps = 7/718 (0%)
Strand = Plus / Plus
Query: 40 gcttccaaattacataaagctaacatttctagaaaagcttttacattttcttgaagagtc 99
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8456 gcttccaaattacataaagctaacaattctagaaaagcttttacattttcttgaagagtc 8515
Query: 100 t-aactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaaaatttatc 158
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8516 tcaactaattggtgacatgtgcgtttaccatattgtcgattggctccagcaaaatttatc 8575
Query: 159 tgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatcacttttaa 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 8576 tgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaaatcacttctaa 8635
Query: 219 taatttgatcaaaagcactaataaaaaaagaagattcaatgccagaacctctaaattgtc 278
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8636 taatttgatcaaaagcactaataaaaaaagaagattcaatgccagagcctctaaattgtc 8695
Query: 279 gaatcaagaggttt-cagagttggaagatgaatatagaaagaggcagaaaagtaatgaat 337
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 gaatcaagaggttttcagagttggaagatgaatatagaaagaggcagaaaagtaatgaat 8755
Query: 338 tccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaattctatcg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8756 tccatactatgagggaacagcgctcaaagctaccggcttggaaaatacagaattctatcg 8815
Query: 398 tagagcttataaattctaatgatgttgttcttattacaggtgaaactggttcgggtaaat 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8816 tagagcttataaattctaatgatgttgttcttattacaggtgaaactggttcgggtaaat 8875
Query: 458 caacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgatttgaacaaga 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8876 caacacaggtcgttcaatttgtccttgataatttaatgcaacatggcgatttgaacaaga 8935
Query: 518 cgtncataatctgcacacagccaagaaggatatctgcaattggtctagcggagcgtgtat 577
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8936 cgtccataatctgcacacagccaagaaggatatctgcaattggtctagcggagcgtgtat 8995
Query: 578 cacaggaacggtgtgtcaaatgtggtgatgaagtanggtatattattagaggtgttaatc 637
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8996 cacaggaacggtgtgtcaaatgtggtgatgaagtagggtatattattagaggtgttaatc 9055
Query: 638 tgacaaaaagtgctaccaggattaaattcatgacaactggttgttcttgttcgtattcta 697
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 9056 tgacaaaaagtgctaccagaattaaattcatgacaactgg-tgttcttgttcgtattcta 9114
Query: 698 caaggagatggcacttttcttgaatgacttgcgtggtttgttatccgatgaagttcac 755
|||||||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||
Sbjct: 9115 caaggagatgtcac-tttcttgaatgac-tgcgtgg-ttgttat-cgatgaagttcac 9168
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8834
Number of Sequences: 1807
Number of extensions: 8834
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)