BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA04FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1235 0.0
>3x_Contig1474
Length = 10584
Score = 1235 bits (623), Expect = 0.0
Identities = 731/758 (96%), Gaps = 7/758 (0%)
Strand = Plus / Plus
Query: 86 cggaggtacaaacaacncacgtgataaataggtgtcgct-ataataatatatggtcatgc 144
||||||||||||||| |||||||||||||||||| | | ||||||||||||| ||||
Sbjct: 6102 cggaggtacaaacaagtcacgtgataaataggtgtggttcataataatatatgtatatgc 6161
Query: 145 ataagatgcgctatccgaataaaattgtagtatatatttacaagaggatgacggggaggt 204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6162 ataagatgcgctatccgaataaaatagtagtatatatttacaagaggatgacggggaggt 6221
Query: 205 attcgacgtatctattcataacggggaacagccgacctcattcctggtcctttttcttgg 264
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 6222 attcgacgtatctattgtcaacggtgaacagccgttctcattcctggtcctttttcttgg 6281
Query: 265 ctcgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 324
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6282 cttgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 6341
Query: 325 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 6401
Query: 385 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6402 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 6461
Query: 445 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6462 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 6521
Query: 505 tgcccaccatgttcgttactttccttacagctcacctatttacctccttcctcaatatat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6522 tgcccaccatgttcgttactttccttacagctcacctatttacctccttcctcaatatat 6581
Query: 565 tatttaatcactcgctcaaaagaaagggggtctcgaaataaataatcagcagttgcaagt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6582 tatttaatcactcgctcaaaagaaagggggtctcgaaataaataatcagcagttgcaagt 6641
Query: 625 gtcaccaatttgtcctgtaacctggcttaactttcaagaaacttgatgtccttttaaaaa 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6642 gtcaccaatttgtcctgtaacctggcttaactttcaagaaacttgatgtcctttaaaaaa 6701
Query: 685 tacaacttagtattttgatcgaaaaagaaagagaaaaagaaattttggcgagtaaaagac 744
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6702 tacaacttagtattttgatcgaaaaagaaagagaaaaagaaatattggcgagtaaaagac 6761
Query: 745 ataanattcttccgtagaagttgaatcaccaggtcaagctggtgtggggattaactagtt 804
|||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 6762 ataa-attcttccgtagaag-tgaatcaccaggtcaagctggtgt-gggataaactagtt 6818
Query: 805 cttgggggcataggcggatgccctatccaaccccaaaa 842
| | |||||||| ||||||| |||||||||||| ||||
Sbjct: 6819 c-tcggggcata-gcggatg-cctatccaacccaaaaa 6853
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)