BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA05RM1.SCF screened BAC_end
(1014 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig942 355 1e-97
3x_Contig508 337 3e-92
>3x_Contig942
Length = 3614
Score = 355 bits (179), Expect = 1e-97
Identities = 252/271 (92%), Gaps = 4/271 (1%)
Strand = Plus / Plus
Query: 286 ccaataggtccaacttaccaatagcttctattgtatcttctctcttctcaccaggaggat 345
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 4 ccaataggtccaagttaccaataggttatattgtatcttctctcttctcaccaggaggat 63
Query: 346 gtgtaattgatgatacaacgaaagtattgcttgc-agtgtaataaataccctccaccaat 404
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct: 64 gtgtaattgatgatacaacgaaagtattgcttgcaagtgtaataaataccctcgacgaat 123
Query: 405 acaatacatccaggaacataataagttcctttcgttggtatagcttgctgaaggtgcaat 464
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 124 acaatacatccaggaaaataataagttcccttcgttggtatagcttgctgaaggtgcaat 183
Query: 465 tc-aatgctaccgttgggggtctt-taaactccaattcccctgggaattctgatccagga 522
|| ||||||| || | |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct: 184 tcaaatgctagcgct-ggggtcttctaaactccaattccccttggaattctgatccagta 242
Query: 523 gcccaggcaatagaaaggttttaccatcatg 553
| ||| ||||||||||| | |||||||||||
Sbjct: 243 gtccaagcaatagaaagttcttaccatcatg 273
>3x_Contig508
Length = 2437
Score = 337 bits (170), Expect = 3e-92
Identities = 199/208 (95%), Gaps = 1/208 (0%)
Strand = Plus / Plus
Query: 49 ggatgaaccgggacggatacttaagaaccattaaacacgatcgctactggaggatccgtt 108
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2230 ggatgaaccgggacggatacaaaagaaccattaaacacgatcgctactggaggatccgtt 2289
Query: 109 gttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2290 gttaacttgtcaaatgttttctttagtccatccattgtagtcatttcatccaaatatatg 2349
Query: 169 tcctttccgagaatgacaaatttgttatcgctgagctcttgttcaaggt-aggtaancgt 227
||| |||||||||||||||||||||||||||||||||||||||||||| | | || |||
Sbjct: 2350 tcccctccgagaatgacaaatttgttatcgctgagctcttgttcaaggtaatgcaatcgt 2409
Query: 228 atttntaaatctttatctaaccttgcca 255
|||| |||||||||||||||||||||||
Sbjct: 2410 atttttaaatctttatctaaccttgcca 2437
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5624
Number of Sequences: 1807
Number of extensions: 5624
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 2
length of query: 1014
length of database: 10,358,551
effective HSP length: 16
effective length of query: 998
effective length of database: 10,329,639
effective search space: 10308979722
effective search space used: 10308979722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)