BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA06FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig351 1471 0.0
>3x_Contig351
Length = 1152
Score = 1471 bits (742), Expect = 0.0
Identities = 809/829 (97%), Gaps = 2/829 (0%)
Strand = Plus / Plus
Query: 87 tggaggatatcatggtccattatgatggtacaacaagaaactctctagggaatgttatac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tggaggatatcatggtccattatgatggtacaacaagaaactctctagggaatgttatac 149
Query: 147 agttcatctatggtgaagatggtatggatgcagcgcacatcgaaaagcagtcaattgata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agttcatctatggtgaagatggtatggatgcagcgcacatcgaaaagcagtcaattgata 209
Query: 207 ctattcctggatctgatagtgctttcgaaaggcgttacagaatcgacctattaaatgagg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctattcctggatctgatagtgctttcgaaaggcgttacagaatcgacctattaaatgagg 269
Query: 267 agtacgccttggatccctctcttttggaatcaggatccgaaattatcggagactcaaaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agtacgccttggatccctctcttttggaatcaggatccgaaattatcggagactcaaaat 329
Query: 327 tgcaattactacttaacgatgagtacaaacagcttgttgatgaccgtcaaattttgagaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgcaattactacttaacgatgagtacaaacagcttgttgatgaccgtcaaattttgagaa 389
Query: 387 gggtgtttgtcgatggtgaacacaattggcctctacctgttaacatcaagcgtattatcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gggtgtttgtcgatggtgaacacaattggcctctacctgttaacatcaagcgtattatcc 449
Query: 447 agaactcacagcaaacattccgtatcgatcaaaccaaaccaactgatttaacaattgaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agaactcacagcaaacattccgtatcgatcaaaccaaaccaactgatttaacaattgaag 509
Query: 507 atgttatttcaggcgtaaggaaattacaggagaagcttctagtcgtacgtgggaagagtg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atgttatttcaggcgtaaggaaattacaggagaagcttctagtcgtacgtgggaagagtg 569
Query: 567 acatcttaaaagaagctcaacaaaatgcaatcacgttattctgctgcttattgcgttctc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 acatcttaaaagaagctcaacaaaatgcaatcacgttattctgctgcttattgcgttctc 629
Query: 627 gtctagctacacgtagggtgattgaagaatacagattgaacagacagacctttgattggg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtctagctacacgtagggtgattgaagaatacagattgaacagacagacctttgattggg 689
Query: 687 tgctaaacaatatcgaagcacaattcctaagatctattgttcatccaggtgaaatggttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgctaaacaatatcgaagcacaattcctaagatctattgttcatccaggtgaaatggttg 749
Query: 747 gtgttttggctgctcaattcatcggtgagcctgccactcagatgacatttgatactttcc 806
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 750 gtgttttggctgctcaatccatcggtgagcctgccactcagatgacattgaatactttcc 809
Query: 807 atttcgctggttgtgcctnccaggaagttactttcagtggttcctcctttaaaggaaaat 866
||||||||||| |||| | || | ||||| ||||| ||||||| ||||||||||| |
Sbjct: 810 atttcgctggtgtggcctccaagaaggttac-ttcaggtgttcctcgtttaaaggaaatt 868
Query: 867 tttaatgtcctcaaaaatttgaagaccccgtcttcttactgtgtattta 915
|| |||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 869 ttaaatgtcgccaaaaatatgaagaccccgtc-tcttactgtgtattta 916
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5928
Number of Sequences: 1807
Number of extensions: 5928
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)