BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA06RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 1203 0.0
>3x_Contig342
Length = 2225
Score = 1203 bits (607), Expect = 0.0
Identities = 735/763 (96%), Gaps = 11/763 (1%)
Strand = Plus / Minus
Query: 45 gcttaattgttttcattgatcgtgttgcagaacgatacgaaccatgagtctgttgaggag 104
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 1056 gcttaattgttttcattgatcatgtcgcagaacgatacgaaccatgagtctgttgaggag 997
Query: 105 gctgtttt-aagtacgttggagttggcctagagaaatctggggaagacgacgctgtgaac 163
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 gctgttttcaagtacgttggagttggcctagagaaatctggggaagacgacgctgtgaac 937
Query: 164 aagcagaagtccgtagattggtttttgaaggaacaagaccaagaccaggacca-gatcag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 936 aagcagaagtccgtagattggtttttgaaggaacaagaccaagaccaggaccaagatcag 877
Query: 223 gatccgggcagggaccaggaccaggaggataatgcgaaacatcgtgatgctaacgatgta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gatccgggcagggaccaggaccaggaggataatgcgaaacatcgtgatgctaacgatgta 817
Query: 283 agtgcagtcgctgcagctgctgtggcagctgct-ctt-tctgtgaagaaaagaggccgtc 340
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 816 agtgcagtcgctgcagctgctgtggcagctgcttcttctctgtgaagaaaagaggccgtc 757
Query: 341 caagcgagcaaagtagtactgggtctagtggcaagggtagtggttcttcaggtcagaata 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 caagcgagcaaagtagtactgggtctagtggcaagggtagtggttcttcaggtcagaata 697
Query: 401 ataagaagtctaagaagaataaaaataagctacatctagctgctgtggatcctgaattag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ataagaagtctaagaagaataaaaataagctacatctagctgctgtggatcctgaattag 637
Query: 461 catcgttagatgataatttggtcgatgggaacgattcggaggagcaatctcatcaccaat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 catcgttagatgataatttggtcgatgggaacgattcggaggagcaatctcatcaccaat 577
Query: 521 tggtccataaggcaatcatggacactgataacatcgcttctcaacacccggatttccaac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggtccataaggcaatcatggacactgataacatcgcttctcaacacccggatttccaac 517
Query: 581 aatatttgaacacggaagacgatcaagaacctaagaagg-aaaaaagcgaagagcgttcg 639
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 516 aatatttgaacacggaagacgatcaagcacctaagaaggaaaaaaagcgaagagcgttcg 457
Query: 640 tatggtgaccttt-caacatagacgatcatgtagatgacgtctcagtatctggtagcatt 698
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 456 tatggtgacctttccaacatagacgaacatgtagatgacgtctcagtatctggtagca-a 398
Query: 699 cctttcacaggataaggctgaagaaaacttgcgg-agtggtgcctaaagtgctggcattt 757
|| ||||||||| ||||||||||||||| |||| ||| |||||||||||| || |
Sbjct: 397 cccttcacagga-aaggctgaagaaaac-agcggaagtaaaacctaaagtgctgtca-tc 341
Query: 758 tgaatttcattacgacgatcaacaggatgaggtatcaaatttg 800
||||| |||| ||||||||||||| ||||| ||||||||||||
Sbjct: 340 tgaatctcataacgacgatcaacaagatgatgtatcaaatttg 298
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6661
Number of Sequences: 1807
Number of extensions: 6661
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)