BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA07FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1126 0.0
>3x_Contig1224
Length = 5948
Score = 1126 bits (568), Expect = 0.0
Identities = 596/603 (98%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 74 tgaagtccaaatcgcgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 133
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953
Query: 134 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013
Query: 194 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073
Query: 254 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggngtcgatttt 313
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 4133
Query: 314 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 4193
Query: 374 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 4253
Query: 434 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 4313
Query: 494 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacattccaccaataat 553
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4314 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 4373
Query: 554 cgcagatatggtaatcaagcacgagaatgtacctgcctacgacataactgagaataaaac 613
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4374 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 4433
Query: 614 gaataactcatggtcattgtccaaagtttgtatataatgtttttgtgaaccaacggtttt 673
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 4434 gaataactcagggtcattgtccaaagtttgtatataatg-ttttgtgaa-caacggtttt 4491
Query: 674 agg 676
|||
Sbjct: 4492 agg 4494
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7817
Number of Sequences: 1807
Number of extensions: 7817
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)