BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA07RM1.SCF screened BAC_end
(1093 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig655 573 e-163
>3x_Contig655
Length = 2459
Score = 573 bits (289), Expect = e-163
Identities = 353/373 (94%), Gaps = 1/373 (0%)
Strand = Plus / Minus
Query: 113 atgaacacattaatgacacattatctagaagttgaaaaagatagccattccgctgtggat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atgaacacattaatgacacattatctagaagttgaaaaagatagccattccgctgtggat 572
Query: 173 ttatattcttggagaaagaagtggcaaatacctcccaatgaatacactgaaacaaatttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttatattcttggagaaagaagtggcaaatacctcccaatgaatacactgaaacaaatttg 512
Query: 233 ttcaaagggttggcaaggctgccattattttttttctgccaaagttgcataacgagtggt 292
|||||||||||||||||| ||||| | ||| ||| |||||||||| ||||||||||
Sbjct: 511 ttcaaagggttggcaaggttgccagaaccaattt-ctgtcaaagttgcagaacgagtggt 453
Query: 293 gaagatagttttaaaattggttgaagatgaaagactctataatgtaaattttaacgctgc 352
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 452 gaagatagttttaaaattggttgaagatgaaagactcaataatataaattttaacgctgc 393
Query: 353 attaagtgcgcaggcgaactctaacgaccctagttacctgttcaaatgtttttatttgat 412
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 392 attaagtgcgttggcgaactctaacgaccctagttacctgttcaaatgttttgatttgag 333
Query: 413 acccataggtataaaaaaagatgcaattgcttacacgcaactacttattggatgtgcgaa 472
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 332 acccaaaggtataaaaaaagatgcaattgcgtacacgcaactacttattggatgtgcgaa 273
Query: 473 tatttcagatgca 485
||| ||||||||
Sbjct: 272 gattacagatgca 260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,749
Number of Sequences: 1807
Number of extensions: 10749
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 1093
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1077
effective length of database: 10,329,639
effective search space: 11125021203
effective search space used: 11125021203
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)