BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA08FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1449 0.0
>3x_Contig1020
Length = 4879
Score = 1449 bits (731), Expect = 0.0
Identities = 821/839 (97%), Gaps = 9/839 (1%)
Strand = Plus / Minus
Query: 87 tgcaaagcaataccacggtcaacaactggcgtggactctttcaaaattgtcatatcggta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2520 tgcaaagcaataccacggtcaacaactggcgtggactctttcaaaattgtcatatcggta 2461
Query: 147 tacatggccgcatccatcaaccagaatgccaaggtcttatcaccaaccaaagcctgatca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2460 tacatggccgcatccatcaaccagaatgccaaggtcttatcaccaaccaaagcctgatca 2401
Query: 207 tgagattccgtatatgcgacaaccttttcacggtgccttctatttaccaaggtgtgaaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 tgagattccgtatatgcgacaaccttttcacggtgccttctatttaccaaggtgtgaaca 2341
Query: 267 atatgacccatttcccagtcctcgtctctgctttctttcaaaagtttgatccacatatca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 atatgacccatttcccagtcctcgtctctgctttctttcaaaagtttgatccacatatca 2281
Query: 327 ggtaacgccattgctagacggtaatcaaaaccagcgcctcccagatgacgtggcatacaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 ggtaacgccattgctagacggtaatcaaaaccagcgcctcccagatgacgtggcatacaa 2221
Query: 387 agagtcggataccctgaaacgtcttctgcaatggtgattccgttgtctggtaacaattct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 agagtcggataccctgaaacgtcttctgcaatggtgattccgttgtctggtaacaattct 2161
Query: 447 ctgacaaggtcattagctaacatcaagtatgccaaggcctcatgatcaacaaaagatctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 ctgacaaggtcattagctaacatcaagtatgccaaggcctcatgatcaacaaaagatctt 2101
Query: 507 tcactagataagtactcattgtaatcaccactgaaggcaccaccttcaccaacaccatga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tcactagataagtactcattgtaatcaccactgaaggcaccaccttcaccaacaccatga 2041
Query: 567 tgcaagtatagcattgatgttacaccatcgaatctgaacccgtcaaattgatacacatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 tgcaagtatagcattgatgttacaccatcgaatctgaacccgtcaaattgatacacatca 1981
Query: 627 atgtaaaatgctagattagcaagtaggaatcttttgtacttcaaaatgcccatagttaaa 686
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 1980 atgtaaaatgctagattagcaagtaggaatc-tttgtacttcaaaatgcccatagtt-aa 1923
Query: 687 atagcctagaatcccataaaggatgttcaccacgagaagatgccaaagaattggaaatat 746
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1922 atagcctagaatcccataaaggatgttcaccacgagaagatgccaaagaa-tggaaatat 1864
Query: 747 tgatgatcggatccgtcgaatttggtttaggccatcagtaacattttttaaaagcatgag 806
|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct: 1863 tgatgatcggatccgtcgaa-ttggtttaggccatcagtaaca-tttttagaagcatgag 1806
Query: 807 aattgaaccacatccaagagcacttagattccccattccatggagcagtatcgaccaact 866
|| |||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||
Sbjct: 1805 aa-tgaaccacatccaagagcac-tagaattcccattccat-gagcagtatcgaccaact 1749
Query: 867 cttttaactcgttcagccgttacaaaacgggaagtaacggcaaagaaattggtcacctg 925
|||| |||||| |||| ||| |||||||||||| | ||||||||||||||||||||||
Sbjct: 1748 ctttcaactcg-tcaggcgtaccaaaacgggaagaagcggcaaagaaattggtcacctg 1691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5916
Number of Sequences: 1807
Number of extensions: 5916
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)