BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA09FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1382 0.0
>3x_Contig1647
Length = 14353
Score = 1382 bits (697), Expect = 0.0
Identities = 751/761 (98%), Gaps = 6/761 (0%)
Strand = Plus / Minus
Query: 89 agaggagaaagtgacacaagatgacacaagacgaggcataggcagagcgaaatatatgat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5945 agaggagaaagtgacacaagatgacacaagacgaggcataggcagagcgaaatatatgat 5886
Query: 149 ggggagtcgggatactaaccaaaccaaacgaaaattttcgttatgttacgtgttattccg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5885 ggggagtcgggatactaaccaaaccaaacgaaaattttcgttatgttacgtgttattccg 5826
Query: 209 ttattctttatcattacagcgttttcatttcctattgaatgcttctgtcaagctctagct 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5825 ttattctttatcagtacagcgttttcatttcctattgaatgcttctgtcaagctctagct 5766
Query: 269 tcttttattcgatgccccaagtcccgagaaacctgcatgcgatcaatgacacgggtcata 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5765 tcttttattcgatgccccaagtcccgagaaacctgcatgcgatcaatgacacgggtcata 5706
Query: 329 gttcttccgataacaaaggtagtatacatttctgtccgtcactagtaaatattagtatag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5705 gttcttccgataacaaaggtagtatacatttctgtccgtcactagtaaatattagtatag 5646
Query: 389 tccgacataatgatcccacattggggaattatcttgagatcggaattctaagtgattttg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5645 tccgacataatgatcccacattggggaattatcttgagatcggaattctaagtgattttg 5586
Query: 449 cggaggactcgcgccttgaatgattggcgatttcttgggggccagaagttgggttgtagg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5585 cggaggactcgcgccttgaatgattggcgatttcttgggggccagaagttgggttgtagg 5526
Query: 509 ctggtttagcaaaagtctttgtagtatcaaggtcaggccgtgcaagggttacttcagact 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5525 ctggtttagcaaaagtctttgtagtatcaaggtcaggccgtgcaagggttacttcagact 5466
Query: 569 ggcgtctcaacaattcagggtcatcgacaattttcaaaaacgctgtcatcagacaggctc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5465 ggcgtctcaacaattcagggtcatcgacaattttcaaaaacgctgtcatcagacaggctc 5406
Query: 629 cgatacataatactaagggaatgtacacgaaaaataaggggtccaaattcactgttctcg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 cgatacataatactaagggaatgtacacgaaaaataaggggtccaaattcactgttctcg 5346
Query: 689 aatacaatttcaaaaataacgatggcattaccatcattgcacaacttctaattaatgcca 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5345 aatacaatttcaaaaataacgatggcattaccatcattgcacaacttctaattaatgcca 5286
Query: 749 ttgcaccaaataacttacctgttaaacttttccgatcccgtatttgataactgtgggatt 808
||||||||||||||| |||||| ||||||| |||| ||||||||||||||||| |||||
Sbjct: 5285 ttgcaccaaataactcacctgtagaactttt-cgat-ccgtatttgataactgt-ggatt 5229
Query: 809 gcactgtttggggatagcatgctttcccagtaatttgtagg 849
|||||| ||||||||||||||| |||||||| |||||||||
Sbjct: 5228 gcactg-ttggggatagcatgc-ttcccagt-atttgtagg 5191
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5025
Number of Sequences: 1807
Number of extensions: 5025
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)