BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA12FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 1128 0.0
3x_Contig1253 398 e-111
>3x_Contig774
Length = 2612
Score = 1128 bits (569), Expect = 0.0
Identities = 569/569 (100%)
Strand = Plus / Plus
Query: 87 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2032 tgatcctcaacttagaataacagtcgatgatgctctacaacatccgtatttgtccatctg 2091
Query: 147 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2092 gcatgatcctgcagatgaaccgatatgtacagaaaagttcgatttttcttttgaaagtgt 2151
Query: 207 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2152 caatgagattgaacaacttaaacaaatggtaattgacgaagtgaccgatttcaggcaata 2211
Query: 267 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2212 tgtgagattacccctcttacacgagcaacagcaacaacaggggaagacagacggtggttt 2271
Query: 327 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2272 tgatgatcaaatacgagaagatcaacgcacatttcaagcgcagctagaagaacaagtgaa 2331
Query: 387 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2332 caatggtagaactgcatctaacgttccatcgttcgatgagccgttttctagtcaaatgat 2391
Query: 447 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2392 gggttccgcgtcacaacaagatcctcttgttggtattcattcggataatttaccaagcca 2451
Query: 507 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2452 tgaacttgacttccctcctaggcctagtgagaatgtgctagattcgccaatgggtctaag 2511
Query: 567 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2512 tcatcagcaaacgcataacggctctcctgagtgccaagatataaatgaccttttaggatt 2571
Query: 627 agaaagagaactagaatttggattagata 655
|||||||||||||||||||||||||||||
Sbjct: 2572 agaaagagaactagaatttggattagata 2600
>3x_Contig1253
Length = 5628
Score = 398 bits (201), Expect = e-111
Identities = 245/257 (95%), Gaps = 2/257 (0%)
Strand = Plus / Plus
Query: 675 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tctggtatatagcttcatccactctctttgtagaacataaattgttgctcagattctgct 76
Query: 735 atacgtgaaatgcctttgtacaaatttacacatcatataacaatcataaaactggcagct 794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 77 atacgtgaaatgcctttgtacaaatttacacatcaaataacaatcataaaactggcagct 136
Query: 795 tcagtgaatacaaagatactcatgttctcatattctataaagacctgagatagtgttatc 854
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 137 tcagtgaatacgaagatactcatgttctcatattctataaagaactgagatagtgtaat- 195
Query: 855 ttgtttaatcgactacttttggagcatattcaaatgtatcatacccgaattggtctgttg 914
||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||
Sbjct: 196 ttggttaatcgactacttttgaagcatatacaaatgtatcatacccgaatt-gtctgctg 254
Query: 915 aaacaggttcagctgca 931
||||| || ||||||||
Sbjct: 255 aaacaagtgcagctgca 271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6296
Number of Sequences: 1807
Number of extensions: 6296
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 2
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)