BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZA12RM1.SCF screened BAC_end
(976 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1253 1181 0.0
>3x_Contig1253
Length = 5628
Score = 1181 bits (596), Expect = 0.0
Identities = 698/719 (97%), Gaps = 11/719 (1%)
Strand = Plus / Minus
Query: 46 gctttagagaattcggggaaagct-cttggagtcggcgttgccgttctcttt-acagaat 103
|||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct: 1445 gctttagagaattcggggaaagctacatggagtcggcgttgccgttctctttcacagaat 1386
Query: 104 t-aataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccg 162
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1385 tcaataccttgaagttcatttcaagtttgagtgaccataaacctgctcctgttacggccg 1326
Query: 163 tggcagctaacaattataagccatacattgtcacaggttctgacgatggctttttgttta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1325 tggcagctaacaattataagccatacattgtcacaggttctgacgatggctttctgaaaa 1266
Query: 223 tctgggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 tctgggatttatcgaaaatagaaaaagggtctactttcaagcccgtagtaaatcatgagc 1206
Query: 283 taggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 taggatcatccatcgttgatataactttcattgcgaattatgatgtgttcgtggtttcag 1146
Query: 343 caaatgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 caaatgatggatccatcaatttgttcaaaataaacttcaaaaatcacataacgaaccgcg 1086
Query: 403 aaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 aaatacaatgtatcgaaaatctacgacatttcacgtttaaagaagcaaaagaatatggca 1026
Query: 463 cttctttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 cttctttatcgtacactaatgatgattcaaaaccttggataattactgtaactaaccatg 966
Query: 523 gtcgtattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 gtcgtattgttatgttagatatcagagacatgtcagtcgtccatcaaatcgtaatatcgc 906
Query: 583 ccgtgtatggttcagttacaacttcgtctgttagttctgacggtcattggctactatgtg 642
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ccgtgtatggttcagtttcaacttcgtctgttagttctgacggtcattggctactatgtg 846
Query: 643 gaacaacacacggagcattacttcttttggaatctcacatttaaaaatttttggagatac 702
|||||||||||||||||||||||| ||||||||||||||||||||| |||||| || |
Sbjct: 845 gaacaacacacggagcattacttc-tttggaatctcacatttaaaa--ttttggtga-aa 790
Query: 703 tcttgttgttttgagagatgaaagtccttattctcaagggtcattctttttccaaaagg 761
||||| ||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||
Sbjct: 789 tcttggtgttttg-gagatgaaagtcc-tattcgcaa-ggtcattc-ttttccaaaagg 735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8496
Number of Sequences: 1807
Number of extensions: 8496
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)