BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB01RM1.SCF screened BAC_end
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 656 0.0
>3x_Contig1294
Length = 6938
Score = 656 bits (331), Expect = 0.0
Identities = 359/363 (98%), Gaps = 4/363 (1%)
Strand = Plus / Plus
Query: 48 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 4392
Query: 108 tccctttactcaagatctttgatcactcgaaata-tcgggcagggccctttattcgcaag 166
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4393 tccctttactcaagatctttgatcactcgaaataatcgggcagggccctttattcgcaag 4452
Query: 167 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 4512
Query: 227 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 4572
Query: 287 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 4632
Query: 347 ttataatggaaaatgatatctaagaacatattaaagtgcgaattctccagtttagaaaga 406
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct: 4633 ttataatggaaaatgatatctaagaacatatt-aagtgcgaa-tctccag-ttagaaaga 4689
Query: 407 tcg 409
|||
Sbjct: 4690 tcg 4692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,509
Number of Sequences: 1807
Number of extensions: 20509
Number of successful extensions: 302
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)