BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB02FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1390 0.0
>3x_Contig1224
Length = 5948
Score = 1390 bits (701), Expect = 0.0
Identities = 798/820 (97%), Gaps = 9/820 (1%)
Strand = Plus / Plus
Query: 86 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953
Query: 146 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013
Query: 206 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073
Query: 266 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 4133
Query: 326 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 4193
Query: 386 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 4253
Query: 446 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 4313
Query: 506 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 4373
Query: 566 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 4433
Query: 626 gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 4493
Query: 686 gtttataacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaaat 745
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4494 gtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaatt 4553
Query: 746 cgtgattcaatggtaccaagtacgtgattcaatataggtttctccgtaaagaattttgac 805
|||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct: 4554 cgtgatcaaatggtaccaagtacgtgattcaatataggttt-tccgt-aaggattttgac 4611
Query: 806 cattcaatcctgtgtgaactttaaattattccatattccgcgggtagaatcggcatattt 865
|||||||| |||||||||| ||| | |||| ||||| |||| ||||| ||||||||| ||
Sbjct: 4612 cattcaat-ctgtgtgaac-ttagaatatttcatatcccgc-ggtag-atcggcatagtt 4667
Query: 866 gtaaccatcttttacattttaaactggtttaatggttttt 905
| ||||||||| || |||||||||| ||||||||||||
Sbjct: 4668 ggtaccatcttt--caatttaaactgg-ttaatggttttt 4704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6797
Number of Sequences: 1807
Number of extensions: 6797
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)