BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB05FM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1485 0.0
>3x_Contig1265
Length = 8324
Score = 1485 bits (749), Expect = 0.0
Identities = 792/804 (98%), Gaps = 2/804 (0%)
Strand = Plus / Plus
Query: 87 ccgggtgtctcttcaacaactctgtaattatcaacttgcacttcattcatatttttctaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 ccgggtgtctcttcaacaactctgtaattatcaacttgcacttcattcatatttttctaa 4930
Query: 147 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 gatcattggactcagtaggaagggtgtgacttcttaacaaggtgcctttttttgtcttgg 4990
Query: 207 acaagttgctttacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 acaagttgctctacacatttcccaccaaagtagtcaatgtcctcagtttttgaatgaagg 5050
Query: 267 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 tatagcgttgttatgttagtaattgtgccatttaattcgaaacacgtcctagtgtgacct 5110
Query: 327 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 aaaaccccagaaaacgagagaatacatactccggaattgagtcctgtgatagagccattg 5170
Query: 387 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 ttgatgattgatgttccttgatctgttactgctttatactatgtggtttatgcaaagcat 5230
Query: 447 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 gggacgccactggcaagtttgttcatcttgcgaaggtgtgcagtttattcatagaaatcg 5290
Query: 507 ttttcatttcttcgaaagatgatattatagtaatgataataataatacgtaagtgtaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 ttttcatttcttcgaaagatgatattatagtaatgataataataatacgtaagtgtaaaa 5350
Query: 567 gagaaaaaaagaccaggtaaccaaatatatataaaaagggaacagagcaagcgcaacaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 gagaaaaaaagaccaggtaaccaaatatatataaaaagggaacagagcaagcgcaacaca 5410
Query: 627 tacaattctgtatatgtttgtatatagtatgcactcttactcgtcaatcgaccattcttt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 tacaattctgtatatgtttgtatatagtatgcactcttactcgtcaatcgaccattcttt 5470
Query: 687 ggcagtgagacagtacttttctggaggcaaacgcacaccccaagatgacacaacgttggg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 ggcagtgagacagtacttttctggaggcaaacgcacaccccaagatgacacaacgttggg 5530
Query: 747 gcacggtttcttgtttctttctgccgctagctgtaacatgagtttcttttggagcagtag 806
|||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||||
Sbjct: 5531 caacggtttcttgtttctctctgccgcaagctgtaacatgag-ttcctttggagcagtag 5589
Query: 807 gcttgaaatgttactgtgtgcgagctccgatcgctaaccg-ntatcttttatcgaaacat 865
||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 5590 gcttgaattggtactgtgtgcgagctccgatcgctaaccgtatatcttctatcgaaacat 5649
Query: 866 ccgaagcagaccctcctacgtact 889
||||||||||||||||||||||||
Sbjct: 5650 ccgaagcagaccctcctacgtact 5673
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7110
Number of Sequences: 1807
Number of extensions: 7110
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)