BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB05RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1372 0.0
>3x_Contig1776
Length = 26138
Score = 1372 bits (692), Expect = 0.0
Identities = 743/753 (98%), Gaps = 6/753 (0%)
Strand = Plus / Plus
Query: 48 tgagtcaagaacctcaactcagataccctagaaatctcacagagacgacaactaaaatca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23905 tgagtcaagaacctcaactcagataccctagaaatctcacagagacgacaactaaaatca 23964
Query: 108 agctcaattggaaaataaaacaagcaagtaaaaaacaaacaagcacttgacactgtttaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23965 agctcaattggaaaataaaacaagcaagtaaaaaacaaacaagcacttgacactgtttaa 24024
Query: 168 gggtttgcttccttttaaaaaacattcctagcaacgtccctgtttcagatttaggttgaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24025 gggtttgcttccttttaaaaaacattcctagcaacgtccctgtttcagatttaggttgaa 24084
Query: 228 gtcgctctgcaggtaattactgcaccacaatatgttaacggtggctgcaagatcgattgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24085 gtcgctctgcaggtaattactgcaccacaatatgttaacggtggctgcaagatcgattgc 24144
Query: 288 tatgtacaacggagagctgtctccatctggaggtcaagtcacgtgagaaacaaggatgtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24145 tatgtacaacggagagctgtctccatctggaggtcaagtcacgtgagaaacaaggatgtt 24204
Query: 348 tgtcgcacattcgggtaatgaaatgtcatctcccgtggatatcaatttcattctgaaact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24205 tgtcgcacattcgggtaatgaaatgtcatctcccgtggatatcaatttcattctgaaact 24264
Query: 408 tcatcaatttgatatcaattgaaaagaaatgaatgaaatggaaaagtatgcagaacatgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24265 tcatcaatttgatatcaattgaaaagaaatgaatgaaatggaaaagtatgcagaacatgc 24324
Query: 468 gaatacaggaaagcttattcatgcgcatttcatcaggataggcttgaacgcaatagttcg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24325 gaatacaggaaagcttattcatgcgcatttcatcaggataggcttgaacgcaatagttcg 24384
Query: 528 aaatatagaagcaacatcgttggcggcttaaaggggattcgcgactgtttagaagctaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24385 aaatatagaagcaacatcgttggcggcttaaaggggattcgcgactgtttagaagctaac 24444
Query: 588 tgtggagtgcanaagaatgccagaacagcctaagtgtcctgtggatgactccacgaagga 647
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24445 tgtggagtgcaaaagaatgccagaacagcctaagtgtcctgtggatgactccacgaagga 24504
Query: 648 agtgtggttgaaacaacagagcactaataataagaatgaatcagcanaagcactaccttc 707
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 24505 agtgtggttgaaacaacagagcactaataataagaatgaatcagcaaaagcactacctcc 24564
Query: 708 aaatcatccaaccggctagntcttgaagggtcaggaagtttgtcccggtagaccattctt 767
||||||||| ||||||||| || |||||||||||| ||||||| |||||||||||||| |
Sbjct: 24565 aaatcatcc-accggctagttc-tgaagggtcagg-agtttgt-ccggtagaccattc-t 24619
Query: 768 tcccaggatgtatggcctgaaaaaccatctaca 800
||||||||||||||| |||||||||||||||||
Sbjct: 24620 tcccaggatgtatgg-ctgaaaaaccatctaca 24651
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6896
Number of Sequences: 1807
Number of extensions: 6896
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)