BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB06FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 1487 0.0
>3x_Contig1667
Length = 12071
Score = 1487 bits (750), Expect = 0.0
Identities = 800/811 (98%), Gaps = 5/811 (0%)
Strand = Plus / Plus
Query: 92 gatcatttcgcatacagtattctactacagttaaaagatctcacacaaacggaccagaaa 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 gatcatttcgcatacagtattctactacagttaaaagatctcacacaaacggaccagaaa 3227
Query: 152 cctcatatactccaggaaacggatcactcaatggctaaggaacaggcgttagagagaatt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3228 cctcatatactccaggaaacggatcactcaatggctaaggaacaggcgttagagagaatt 3287
Query: 212 caaatgtatgatgatctattgctatgcattgataactatatggcgacggccaaatggcag 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3288 caaatgtatgatgatctattgctatgcattgataactatatggcgacggccaaatggcag 3347
Query: 272 aaattatggcgtggaacccatttttgggtatccattttcttcattatcgcatccatggtg 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3348 aaattatggcgtggaacccatttttgggtatccattttcttcattatcgcatccatggtg 3407
Query: 332 gtgacaactttcacatcaaatatagcaggttggtcttcaattttctggatcctgttctct 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3408 gtgacaactttcacatcaaatatagcaggttggtcttcaattttctggatcctgttctct 3467
Query: 392 gtagcccttacagcatcaggattaatcgatggtttaatatcgctcttgtttggtaacaaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3468 gtagcccttacagcatcaggattaatcgatggtttaatatcgctcttgtttggtaacaaa 3527
Query: 452 gaaatacgtgctttacaggaagtatacgaagaagtctcagatgcaaaacgtttcctatca 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3528 gaaatacgtgctttacaggaagtatacgaagaagtctcagatgcaaaacgtttcctatca 3587
Query: 512 agtagtgtaaataattgataaattcctctttttaatttcaatataataatttgtttaatg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3588 agtagtgtaaataattgataaattcctctttttaatttcaatataataatttgtttaatg 3647
Query: 572 gctttcagcaacagctgttcgcattgatttttgtgttctactaaatcatagtgctaaaca 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3648 gctttcagcaacagctgttcgcattgatttttgtgttctactaaatcatagtgctaaaca 3707
Query: 632 ttgtcttgagtctcttttccattctgacatatttctgtgctgcttttgtcagtcttccat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3708 ttgtcttgagtctcttttccattctgacatatttctgtgctgcttttgtcagtcttccat 3767
Query: 692 ttgatgactctggttcgac-aaagtctctatcgcatgtgtttgatttccgggtaacttat 750
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3768 ttgatgactctggttcgacaaaagtctctatcgcatgtgtttgatttccgggtaacttat 3827
Query: 751 taaaactctgtttctattggttnctgnggnatataagctatccttaaatcaccacgcacc 810
|||||||||||||||||| ||| ||| || |||||||||||||||||||||| |||||||
Sbjct: 3828 taaaactctgtttctatt-gtttctgtggtatataagctatccttaaatcacgacgcacc 3886
Query: 811 ttaat-aaataaaaggatgatattggcanaaaactc-gtgcccaggggttaatttaatat 868
||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 3887 ttaataaaataaaaggatgatattggca-aaaactcggtgcccaggggttaatttaatat 3945
Query: 869 taacatttggttgctggtactttagtgggtg 899
||||||||||||||||||||||||| ||||
Sbjct: 3946 aaacatttggttgctggtactttagtaggtg 3976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6453
Number of Sequences: 1807
Number of extensions: 6453
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)