BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB06RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1092 0.0
>3x_Contig1778
Length = 27694
Score = 1092 bits (551), Expect = 0.0
Identities = 601/615 (97%), Gaps = 2/615 (0%)
Strand = Plus / Minus
Query: 49 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 16110
Query: 109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 16050
Query: 169 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagattttttcatcaa 228
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 16049 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 15990
Query: 229 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15989 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 15930
Query: 289 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 15870
Query: 349 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 15810
Query: 409 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 15750
Query: 469 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 15690
Query: 529 atcaaattgaaaacccgtc-ggagccttattttcgggtgtcaatccgaacgggtgctcta 587
||||||||||||| ||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct: 15689 atcaaattgaaaa-ccgtcgggagccttattttcgggtgtcaatccgagcggttgctcta 15631
Query: 588 agagattaacagaataaatccttgaacgcgtaaccattcaaagctcgttttaactcctca 647
||||||||||||||||||| || ||||||||||| || |||||||||||| ||||||||
Sbjct: 15630 agagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctca 15571
Query: 648 ggcgcaatttcaaaa 662
|||||||||||||||
Sbjct: 15570 ggcgcaatttcaaaa 15556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7454
Number of Sequences: 1807
Number of extensions: 7454
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)