BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB08FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1269 0.0
>3x_Contig1604
Length = 15703
Score = 1269 bits (640), Expect = 0.0
Identities = 780/820 (95%), Gaps = 5/820 (0%)
Strand = Plus / Plus
Query: 99 tagcacatacaatggtgactcgattggaaactttaatgaaggaaaacgacagaaatggca 158
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14483 tagcacataaaatggtaactcgattggaaactttaatgaaggaaaacga-agaaatggca 14541
Query: 159 aaaatgcttagttatggtcgagtgaaggagacaagtatcgagctcgaacttttacgtaaa 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14542 aaaatgcttagttatggtcgagtgaaggagacaagtatcgagctcgaacttttacgtaaa 14601
Query: 219 gaaaaccaagaactcaaataaagactaaggattctacagcaagaaaagtaacaccaaagt 278
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14602 gaaaaccaagaactcaaagaaagactaaggattctacagcaagaaaagtaacaccaaagt 14661
Query: 279 ataagatcttgatccttatttttctgatatttttgcttttgtctgccaatgacattatag 338
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 14662 ataagatcttgatccttctttttctgatatttttgcttttttctgccaatgacattctag 14721
Query: 339 ttggacgttttatttgacgatctaaaaactttcgagagtaattcaagatacatgtatgct 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14722 ttggacgttttatttgacgatctaaaaactttcgagagtaattcaagatacatgtatgct 14781
Query: 399 atataacatctacctagattaggtatactttgctgacacacaaaaatgtaaatgaaccat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14782 atataacatctacctagattaggtatactttgctgacacacaaaaatgtaaatgaaccat 14841
Query: 459 tgatatttatttcatccgacgttagaaacttacgattagagaaacttgaacatacaaagt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14842 tgatatttatttcatccgacgttagaaacttacgattagagaaacttgaacatacaaagt 14901
Query: 519 gtacacctttatgtgaagtaattttagttgattaaataaactgtatgcggacttgtcctt 578
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14902 gtagacctttatgtgaagtaattttagttgattaaataaactgtatgcggacttgtcctt 14961
Query: 579 gttatatgtacatgaggaggctcggaaaataaatattggttggtcgattattcttccagc 638
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 14962 gtaatatgtacatgaggaggctcggaaaataaatattggttggccgtttattcttccagt 15021
Query: 639 tacctgagtttggctatcttttcaagaagtgactgcgtgtttaagaagattatgacgtat 698
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct: 15022 tacctgagtttggctatcttttcaagaagtgattgtgtgtttaagaagattatgaggtat 15081
Query: 699 tacaaaaacgatgcggaagaagtgattgatattcatgcctttgtaagagctcttctgttt 758
|||||||||||||||| | ||||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 15082 tacaaaaacgatgcgggaaaagtgattgttattcaagcctttgaaagagctcttctgttt 15141
Query: 759 ttaacaccctttagccaataaacttattacatctttagttgcttcccaaccgatacaggc 818
|||||||||||| |||||||| |||| ||||||| ||||| ||||||||||||||||||
Sbjct: 15142 ttaacacccttt-gccaataatcttagaacatcttcagttgtttcccaaccgatacaggc 15200
Query: 819 attggtgatagaacattcgaaaat-aacttttgacggagctcttctggnagcaacgtctt 877
|| ||||||||||||| || |||| ||||||| |||| ||||||| || ||||||||
Sbjct: 15201 atcggtgatagaacatccgtaaatcaacttttcacggccaccttctgg-aggaacgtctt 15259
Query: 878 gtctaccttcgactaaagtaagattcgatcattacaccac 917
|||||||||||||| |||| |||||||||||| |||||||
Sbjct: 15260 gtctaccttcgact-aagttagattcgatcatgacaccac 15298
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6583
Number of Sequences: 1807
Number of extensions: 6583
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)