BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC23ZB08RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1238                                                        1354   0.0  

>3x_Contig1238 
          Length = 5289

 Score = 1354 bits (683), Expect = 0.0
 Identities = 772/795 (97%), Gaps = 5/795 (0%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttaagctcaattctaatgtctatattgttgatggttcatcggaaactgatccggacgg 103
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3000 gcttaagctcaattctaatgtcaatattgttgatggttcatcggaaactgatccggacgg 3059

                                                                        
Query: 104  cagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccctgctg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 cagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccctgctg 3119

                                                                        
Query: 164  gattttggatatgctccctgacgatatattatccatgattatagacatggttgttttatt 223
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  
Sbjct: 3120 gattttggatatgctccctgacgatatattatccatgattatagacatggttgtgttaag 3179

                                                                        
Query: 224  ctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctatgctt 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 ctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctatgctt 3239

                                                                        
Query: 284  ccacgattcctcaccgtaccggactttcgcggaatacatctataagaagcaagtatacaa 343
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 ccacgattcctcac-gtaccggactttcgcggaatacatctataagaagcaagtatacaa 3298

                                                                        
Query: 344  cgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccgtatg 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 cgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccgtatg 3358

                                                                        
Query: 404  gggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaatata 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 gggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaatata 3418

                                                                        
Query: 464  tatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgctgtt 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 tatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgctgtt 3478

                                                                        
Query: 524  gaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaagatg 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 gaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaagatg 3538

                                                                        
Query: 584  cattagattattgactactgacgaaccaaatatagtggtacctggtttctctttagaaag 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 cattagattattgactactgacgaaccaaatatagtggtacctggtttctctttagaaag 3598

                                                                        
Query: 644  atgtttctgaaagaaaagactcagatatatgttcgggggtccctgtcattagacgaccgg 703
            ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| | 
Sbjct: 3599 atg-ttctgaaagaaaagactcagatatatgttc-gtggtccctgtcattagacgacggc 3656

                                                                        
Query: 704  cttgatcagttgacaattaagaggattagaagaatagatgggcttgaatttaacgagatc 763
            ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 3657 cttgatcagttgacaatcaagaggaatagaagaaaagatgggcttgaatttaacgagatc 3716

                                                                        
Query: 764  ttgaaaatct-aaacagaggtcacatgaagtttcacaagttggaaagggttggcttcttc 822
            |||||||||| |||||||||||||| ||||||   |||||| |||| || | ||||||||
Sbjct: 3717 ttgaaaatctcaaacagaggtcacaagaagttcagcaagtt-gaaatggattgcttcttc 3775

                           
Query: 823  tgccacgaggcaaga 837
            ||| |||||||||||
Sbjct: 3776 tgcaacgaggcaaga 3790


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6495
Number of Sequences: 1807
Number of extensions: 6495
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)