BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC23ZB09FM1.SCF screened BAC_end (917 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig891 1467 0.0 >3x_Contig891 Length = 5018 Score = 1467 bits (740), Expect = 0.0 Identities = 803/816 (98%), Gaps = 6/816 (0%) Strand = Plus / Minus Query: 85 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3624 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 3565 Query: 145 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3564 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 3505 Query: 205 agggatcctgattttttagttccgattacttaccttttcatccataaattagggcccgat 264 ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3504 agggatcctgaatcattagttccgtttacttaccttttcatccataaattagggcccgat 3445 Query: 265 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3444 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 3385 Query: 325 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3384 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 3325 Query: 385 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3324 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 3265 Query: 445 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3264 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 3205 Query: 505 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3204 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 3145 Query: 565 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3144 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 3085 Query: 625 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3084 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 3025 Query: 685 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3024 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 2965 Query: 745 atgatcatcaatgtttgcgttacagtacgggaatcatgaatttgaaccaacatatcaaaa 804 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 2964 atgatcatcaatg-ttgcgttacagtac-ggaatcatgaatttgaaccaacatatc-aaa 2908 Query: 805 ttgagccggggaattcccttacaaccgatgcttgcgaaacccac-aaatcaatcagcgag 863 ||||| | ||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2907 ttgaggccggggattcccttacaaccgatgcttgcgaaacccacaaaatcaatcagcgag 2848 Query: 864 gttgttggacaggtttccagggcactaagtttacct 899 | ||||||||||| |||||||||||||||||||||| Sbjct: 2847 g-tgttggacagg-ttccagggcactaagtttacct 2814 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5237 Number of Sequences: 1807 Number of extensions: 5237 Number of successful extensions: 31 Number of sequences better than 1.0e-20: 1 length of query: 917 length of database: 10,358,551 effective HSP length: 16 effective length of query: 901 effective length of database: 10,329,639 effective search space: 9307004739 effective search space used: 9307004739 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)