BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB09RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1327 1461 0.0
>3x_Contig1327
Length = 7237
Score = 1461 bits (737), Expect = 0.0
Identities = 772/781 (98%), Gaps = 2/781 (0%)
Strand = Plus / Minus
Query: 58 tgaaattaaggaattgcaattatggttgcaaccactcgttaatatggattctttcctcat 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tgaaattaaggaattgcaagtatggttgcaaccactcgttaatatggattctttcctcat 2510
Query: 118 cagtgtacccttctcttagacagtaaaaccaaaggctgaagtccccagcatgtggaactc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 cagtgtacccttctcttagacagtaaaaccaaaggctgaagtccccagcatgtggaactc 2450
Query: 178 tatcgtcgggttcgatatggttatccaaccatttagccctgtaagagactctataacgga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 tatcgtcgggttcgatatggttatccaaccatttagccctgtaagagactctataacgga 2390
Query: 238 agatattctttgaagggaacccgtgttcaaccagtttatgcaaataacctcttcctgaag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 agatattctttgaagggaacccgtgttcaaccagtttatgcaaataacctcttcctgaag 2330
Query: 298 cgtagacttgaccatcaccaatgatgtcaccatatgctaccctcaaatcttccttcaaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 cgtagacttgaccatcaccaatgatgtcaccatatgctaccctcaaatcttccttcaaag 2270
Query: 358 tagggcttgcagggttcaatttatccaccttgtataaatcaagtaatgaatcgacaatgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 tagggcttgcagggttcaatttatccaccttgtataaatcaagtaatgaatcgacaatgt 2210
Query: 418 tctttggatagtaattacccacttgaactggtagttctcccaatgtttgtggtgtgttta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tctttggatagtaattacccacttgaactggtagttctcccaatgtttgtggtgtgttta 2150
Query: 478 gaagagaatatttcagcggttcattatcaacttcaccgcacagaattctgaatttgtcac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 gaagagaatatttcagcggttcattatcaacttcaccgcacagaattctgaatttgtcac 2090
Query: 538 ctttaatggagagtaaccttcttgcgtattctccagaatccaaatctttaatcaaagtgg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctttaatggagagtaaccttcttgcgtattctccagaatccaaatctttaatcaaagtgg 2030
Query: 598 aagagataaacttgtcgtcagtgacagctctgaaagtatggtgtgtcaaagttgggatga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 aagagataaacttgtcgtcagtgacagctctgaaagtatggtgtgtcaaagttgggatga 1970
Query: 658 aatcctcgataaatggtgcgttaagttcacgtaatacagctaatttctcttgccctgatg 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 aatcctcgataaatggtgcgtcaagttcacgtaatacagctaatttctcttgccctgatg 1910
Query: 718 ccttggggtctatgtccaatttctccacaatttcatcgaaattgtcctgacattcttcaa 777
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1909 ccttggggtctatgtccaatttctccacaatttcatcgaattgttcctgacattcttcaa 1850
Query: 778 ttgtttttggttgaacgtaaaccaagttttgaaaagattaa-gcttggttgatgatttga 836
||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 1849 ttgtttttggttgaacgtaaaccaagttt-gaaaagaataaagcttgtttgatgatttga 1791
Query: 837 t 837
|
Sbjct: 1790 t 1790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7365
Number of Sequences: 1807
Number of extensions: 7365
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)