BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1328 0.0
>3x_Contig1743
Length = 20172
Score = 1328 bits (670), Expect = 0.0
Identities = 761/781 (97%), Gaps = 8/781 (1%)
Strand = Plus / Plus
Query: 62 cttaaagaaggctcataatagttttcggcttaacaatttccatgtcaaccaaaagcacgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2024 cttaaagaaggctcataatagttttcggcttaacaatttccatgtcaaccaaaagcacgt 2083
Query: 122 gaaatttgaagtaatcccctactataccacaaaataaagagaaagtgagacgaatagtac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2084 gaaatttgaagtaatcccctactataccacaaaataaagagaaagtgagacgaatagtac 2143
Query: 182 atgagcatcacagaatttctttttcgagaagttacttgacgctttaaaaaagataggcaa 241
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 2144 atgagcatcacagaatttctttttcgaga-gttacttgacgcag-aaaaaagataggcaa 2201
Query: 242 agtaaacagataatcactcaatgaaggaattggcgaaaaggaaactctttgtttcgtcat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 agtaaacagataatcactcaatgaaggaattggcgaaaaggaaactctttgtttcgtcat 2261
Query: 302 cttgactataacacattcaaattaacgacaaaatgattccaagaataacagctcagctac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 cttgactataacacattcaaattaacgacaaaatgattccaagaataacagctcagctac 2321
Query: 362 tagcagtgacaaaaaaaataaatggaagtgtgacatatcaaaattgatcatatagataag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 tagcagtgacaaaaaaaataaatggaagtgtgacatatcaaaattgatcatatagataag 2381
Query: 422 agtataataataaaggggcaaaaagaaaggaaatatatacttatatatctaaggataata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 agtataataataaaggggcaaaaagaaaggaaatatatacttatatatctaaggataata 2441
Query: 482 attagatgatattaaattggtccaacaactgtctaacgtcgtcaaagatagcatcagtct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 attagatgatattaaattggtccaacaactgtctaacgtcgtcaaagatagcatcagtct 2501
Query: 542 ttgaatccaaagagttaatcaagctttccaagctgaattcagggttggcagatggttctt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 ttgaatccaaagagttaatcaagctttccaagctgaattcagggttggcagatggttctt 2561
Query: 602 ttccaatagagtaatccttaccccataggtcatccaaatcttgaccaccaccgttgtaaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 ttccaatagagtaatccttaccccataggtcatccaaatcttgaccaccaccgttgtaaa 2621
Query: 662 tcaagtagttcacggtatctttaggtagatcggacattacgttcttagtagagaaatcaa 721
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 2622 tcaagtagttcacggtatcttcaggtagatcggacaatacgttcttagtagagaaatcaa 2681
Query: 722 ttaactttcttcttgagttgggaagggagtaatacccggcagcggcatggaaaattttca 781
||||| |||||||||||||||||| ||||||||| ||| ||||||||||| |||| ||||
Sbjct: 2682 ttaac-ttcttcttgagttgggaa-ggagtaata-ccgccagcggcatgg-aaatattca 2737
Query: 782 ctttcagcattctggttgcaaggaccanaataattgttggcaaaccgacaacatgaggag 841
|| |||||| ||||||||||||||| | || | |||| |||||||||||||||||||||
Sbjct: 2738 ctatcagca-tctggttgcaaggacaagaa-atatgttagcaaaccgacaacatgaggag 2795
Query: 842 t 842
|
Sbjct: 2796 t 2796
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8197
Number of Sequences: 1807
Number of extensions: 8197
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)