BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZB12RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1238 1431 0.0
>3x_Contig1238
Length = 5289
Score = 1431 bits (722), Expect = 0.0
Identities = 811/830 (97%), Gaps = 8/830 (0%)
Strand = Plus / Plus
Query: 44 gcttaagctcaattctaatgtcattattgttgatggttcatcggaaactgatccggacgg 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3000 gcttaagctcaattctaatgtcaatattgttgatggttcatcggaaactgatccggacgg 3059
Query: 104 cagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccctgctg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 cagaaaagaggaaactgaaggactttctcaaactgaagaccttgttgaacttccctgctg 3119
Query: 164 gattttggatatgctccctgacgatatattatccatgattatagacatggttgtgttaag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3120 gattttggatatgctccctgacgatatattatccatgattatagacatggttgtgttaag 3179
Query: 224 ctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctatgctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 ctcagcagactcgtggatgaacctatctttgacttgtaaaaagtttaatttgctatgctt 3239
Query: 284 ccacgattcctcaccgtaccggactttcgcggaatacatctataagaagcaagtatacaa 343
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3240 ccacgattcctcac-gtaccggactttcgcggaatacatctataagaagcaagtatacaa 3298
Query: 344 cgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccgtatg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3299 cgaaaatgagatgaggctaaacggtatatcagatatacaagcactagcagaaaccgtatg 3358
Query: 404 gggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaatata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 gggtcaaaattatagaaagatgctaaaggaacggccgtatatcaagttccatggaatata 3418
Query: 464 tatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgctgtt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3419 tatcagtgtggtgaattatttgaggcacggatcgatcccggaaggatcatcttcgctgtt 3478
Query: 524 gaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaagatg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 gaacccaatccacatgatcacttattacaggtacttcagattctatccagatggaagatg 3538
Query: 584 cattagattattgactactgacgaaccaaatatagtggtacctggtttctctttagaaag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 cattagattattgactactgacgaaccaaatatagtggtacctggtttctctttagaaag 3598
Query: 644 atgttctgaaagaaaagactcagatatattgttcg-ggtccctgtcattagacgacggcc 702
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 3599 atgttctgaaagaaaagactcagatata-tgttcgtggtccctgtcattagacgacggcc 3657
Query: 703 ttgatcagttgacattcaagaagaatagaagaaaaga-gggcttgaatttaacgagatct 761
|||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 3658 ttgatcagttgacaatcaagaggaatagaagaaaagatgggcttgaatttaacgagatct 3717
Query: 762 tg-aaattttaaacaga-gtcacaagaagttcagcaagttgaaatggattggttctcttg 819
|| |||| | ||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 3718 tgaaaatctcaaacagaggtcacaagaagttcagcaagttgaaatggattgcttcttctg 3777
Query: 820 c-acgaggcaagaccgcacaacaatgcagttcttatttgagcaaataaaa 868
| |||||||||||| |||||||||||||||||| | ||||||||| ||||
Sbjct: 3778 caacgaggcaagacggcacaacaatgcagttctca-ttgagcaaagaaaa 3826
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)