BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC01FM1.SCF screened BAC_end
(1101 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 494 e-139
>3x_Contig1224
Length = 5948
Score = 494 bits (249), Expect = e-139
Identities = 280/288 (97%), Gaps = 3/288 (1%)
Strand = Plus / Plus
Query: 133 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953
Query: 193 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013
Query: 253 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073
Query: 313 aatacctcttgttttaggtgaatatgctcgtgtaatgttacacaatatggtgtcctattt 372
|||||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgt-cgattt 4132
Query: 373 tggataatggtacaatatatagaaaaaatgttttgttacaatggacac 420
||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct: 4133 tggataatggtacaatagatagaaaaattg--ttgttacaatggacac 4178
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,042
Number of Sequences: 1807
Number of extensions: 12042
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 1101
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1085
effective length of database: 10,329,639
effective search space: 11207658315
effective search space used: 11207658315
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)