BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC01RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig655 1114 0.0
>3x_Contig655
Length = 2459
Score = 1114 bits (562), Expect = 0.0
Identities = 615/626 (98%), Gaps = 5/626 (0%)
Strand = Plus / Minus
Query: 45 cttgctggaccaa-tggtgcagttggaatgaacacattaatgacacattatctagaagtt 103
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 658 cttgctggaccaaatggtgcagctggaatgaacacattaatgacacattatctagaagtt 599
Query: 104 gaaaaagatagccattccgctgtggatttatattcttggagaaagaagtggcaaatacct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaaaaagatagccattccgctgtggatttatattcttggagaaagaagtggcaaatacct 539
Query: 164 cccaatgaatacactgaaacaaatttgttcaaagggttggcaaggttgccagaaccaatt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cccaatgaatacactgaaacaaatttgttcaaagggttggcaaggttgccagaaccaatt 479
Query: 224 tctgtcaaagttgcagaacgagtggtgaagatagttttaaaattggttgaagatgaaaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tctgtcaaagttgcagaacgagtggtgaagatagttttaaaattggttgaagatgaaaga 419
Query: 284 ctcaataatataaattttaacgctgcattaagtgcgttggcgaactctaacgaccctagt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctcaataatataaattttaacgctgcattaagtgcgttggcgaactctaacgaccctagt 359
Query: 344 tacctgttcaaatgttttgatttgagacccaaaggtataaaaaaagatgcaattgcgtac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tacctgttcaaatgttttgatttgagacccaaaggtataaaaaaagatgcaattgcgtac 299
Query: 404 acgcaactacttattggatgtgcgaagattacagatgcagtggaagccattcaaagggct 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acgcaactacttattggatgtgcgaagattacagatgcagtggaagccattcaaagggct 239
Query: 464 gatgatataatgaactctgctgaccccaaagttatcgattcacaaatgttttttcattat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gatgatataatgaactctgctgaccccaaagttatcgattcacaaatgttttttcattat 179
Query: 524 ttgaacgtttggcactctagaagggatctacgatttttcaattgtgtgtttgcctctgct 583
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 178 ttgaacgtttggcactctagaagggatctacgattttccaattgtgtg-ttgcctctgct 120
Query: 584 tgatatattctatgatttttagggcccaaatgttcgttttaagaaag-aataccaaaatt 642
||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||| ||||
Sbjct: 119 tgatatattctatgattttaaggtcccaaatgttcgtttcaagaaagaaataccagaatt 60
Query: 643 tgtcaaagttgccctgctttgaagaa 668
|||| |||||| ||||||||||||||
Sbjct: 59 tgtc-aagttg-cctgctttgaagaa 36
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,125
Number of Sequences: 1807
Number of extensions: 13125
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)