BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC02FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig906 902 0.0
3x_Contig903 272 1e-72
>3x_Contig906
Length = 3719
Score = 902 bits (455), Expect = 0.0
Identities = 489/499 (97%), Gaps = 1/499 (0%)
Strand = Plus / Plus
Query: 87 cttcaacgtttctaccgactggcaaatcgttgatggtaatgtgtctcacaacaccctttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3222 cttcaacgtttctaccgactggcaaatcgttgatggtaatgtgtctcacaacaccctttg 3281
Query: 147 gatcaatcaagaacaaacctctcaaggcaacaccttcttcttcaatcaaaacaccgtagt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3282 gatcaatcaagaacaaacctctcaaggcaacaccttcttcttcaatcaaaacaccgtagt 3341
Query: 207 ctctagacaaggaatggttggtatcagcgatcaatgggatgtcaactggacccaaaccac 266
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3342 ctctagacaaggaatggttggtatcagcgattaatgggatgtcaactggacccaaaccac 3401
Query: 267 catcctttctggcaacgttagtccaagccaacaaagagtattcggaatcagtagaagcga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3402 catcctttctggcaacgttagtccaagccaacaaagagtattcggaatcagtagaagcga 3461
Query: 327 acaagacttgagcaccaatggcttcaaatttcttagcagcttcagagaaggcaataattt 386
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 acaagactttagcaccaatggcttcaaatttcttagcagcttcagagaaggcaataattt 3521
Query: 387 cagttgggcaaacgaaagtgaaagccaatggaatgaaggccaaaacgacgtacttaccct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3522 cagttgggcaaacgaaagtgaaagccaatggaatgaaggccaaaacgacgtacttaccct 3581
Query: 447 tgtatttttctaaagaaacttcgtcgaaaacaccgtcgatgacagcggtcttcttgaatt 506
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3582 tttatttttctaaagaaacttcgtcgaaaacaccgtcgatgacagcggtcttctttaatt 3641
Query: 507 ctggagctggcttttgaacttgggcaaccatttcttaactatttttattatgtgttctga 566
||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||
Sbjct: 3642 ctggagctggcttttgaactttggcaa-catttcttaactatttttattttgtgttttgt 3700
Query: 567 tgttttgatcggactataa 585
||||||||| |||||||||
Sbjct: 3701 tgttttgattggactataa 3719
>3x_Contig903
Length = 4000
Score = 272 bits (137), Expect = 1e-72
Identities = 143/145 (98%)
Strand = Plus / Minus
Query: 579 actataaatctatcaattgaaaatatatgaatacaattccttagactaaaacacaatgaa 638
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 actataaatctatcaatttaaaatatatgaatacaattccttagactaaaacacaatgaa 3807
Query: 639 atcagaattcctatgaatagagtaaaggtaatgagatttacaaattaatgcaaaacctaa 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 atcagaattcctatgaatagagtaaaggtaatgagatttacaaattaatgcaaaacctaa 3747
Query: 699 tccctttatatatacttgtaatttc 723
|||| ||||||||||||||||||||
Sbjct: 3746 tcccgttatatatacttgtaatttc 3722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,853
Number of Sequences: 1807
Number of extensions: 12853
Number of successful extensions: 101
Number of sequences better than 1.0e-20: 2
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)