BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC02RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1372 1221 0.0
>3x_Contig1372
Length = 7292
Score = 1221 bits (616), Expect = 0.0
Identities = 645/652 (98%), Gaps = 2/652 (0%)
Strand = Plus / Plus
Query: 52 gcttgtgaaaagtttgaaaagctatgtttgaacgatttaaaacttataaagattaacgga 111
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6638 gcttgtgaaaagtttgaaaagctaggtttgaacgatttaaaacttataaagattaacgga 6697
Query: 112 cgtgtattatgcctagcattccaggattcttttgatcatatacgaacaaaagtcttacaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6698 cgtgtattatgcctagcattccaggattcttttgatcatatacgaacaaaagtcttacaa 6757
Query: 172 ctagcaactatgagaccaggcgttgacattttgcagattactactgaattgtattttt-t 230
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct: 6758 ctagcaactatgagaccaggcgttgacattttgcagattactactgaattgaatgtatat 6817
Query: 231 gaaaaaaataactggtcgatgggcgtaatatccgaggttctacaatattgcgttgccgaa 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6818 gaaaaaaataactggtcgatgggcgtaatatccgaggttctacaatattgcgttgccgaa 6877
Query: 291 ggcaatctagttatggatgaacaaatctcgggtacaaattactatttcaatagttattgg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6878 ggcaatctagttatggatgaacaaatctcgggtacaaattactatttcaatagttattgg 6937
Query: 351 aaagtttgattttaaatccctttattaatgcctttttttaaatgactttccctatataat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6938 aaagtttgattttaaatccctttattaatgcctttttttaaatgactttccctatataat 6997
Query: 411 ataattgtttagccagtgtatagattcctacataaccaaattcttctgtggcgaggttcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6998 ataattgtttagccagtgtatagattcctacataaccaaattcttctgtggcgaggttcc 7057
Query: 471 tagagcgtattcgccattggcagcaactatccttggcaatgcctcgatttgttccacgat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7058 tagagcgtattcgccattggcagcaactatccttggcaatgcctcgatttgttccacgat 7117
Query: 531 gaattctttctcatccaaaaatgtggaatccttattatcagtgccaaactgttcaaagaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7118 gaattctttctcatccaaaaatgtggaatccttattatcagtgccaaactgttcaaagaa 7177
Query: 591 attcagcaatttgtctctattcttgaccaatacatcgagcactggtttagacttccttgg 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7178 attcagcaatttgtctctattcttgaccaatacatcgagcactggtttagacttccttga 7237
Query: 651 gtttgccacaacaactttgaaaatattgaacgattctaattgtaaattcttg 702
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7238 gtttgccacaacaactttgaaaatattgaacgattctaatt-taaattcttg 7288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7765
Number of Sequences: 1807
Number of extensions: 7765
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)