BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC03FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1481 0.0
>3x_Contig1020
Length = 4879
Score = 1481 bits (747), Expect = 0.0
Identities = 804/819 (98%), Gaps = 3/819 (0%)
Strand = Plus / Plus
Query: 98 tgaactttg-aaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 156
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 tgaactttgcaaggtaacgagtttggtcaccctgaatggttggatttccctaacgttaac 2628
Query: 157 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 aacggcgatagttaccattatgctagaaggcagttcaacttggtggatgaccctttgttg 2688
Query: 217 agatactcattatttgtatcagtttgataaggctatgcaaactactgaaaagaattataa 276
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2689 agatac-caatacttgtatcagtttgataaggctatgcaaactactgaaaagaattataa 2747
Query: 277 atggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2748 atggttgaatacaccacaagcgtatgtctctttgaaacacgaagttgacaaggtcatcgc 2807
Query: 337 attcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacaga 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2808 attcgaaagaaatggactcttgttcatcttcaatttccatccgacagaatccttcacaga 2867
Query: 397 ttatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagca 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2868 ttatcgtattggagttaatgagccaggttgctaccgtatcgtattgaactcagacaagca 2927
Query: 457 tgaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgattt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2928 tgaatacggtggctgggatcgtatcgatgagtcccaatccaagtattttactactgattt 2987
Query: 517 gaaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 gaaatggaacgaaagaaacaatttcatccaggtttacattccaaaccgtaccgcattagt 3047
Query: 577 tctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgt 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3048 tctcgcccttgattcaagagtgaggaatggaaattagccaaataatacaaaagcaactgt 3107
Query: 637 atacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaa 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3108 atacctcataccaactaaaccaaagacatagacggaaagaatctcaattccaaaaaaaaa 3167
Query: 697 aaaaaaaacttaggacaccacacatatgctagctaaccattcctcaaactataacaatca 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3168 aaaaaaaacttaggacaccacacatatgctagctaaccattcctcaaactataacaatca 3227
Query: 757 actgcaaaataataataaagattaaataaactaattcaaaacatgtatcaataatgcctg 816
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3228 act-caaaaaaataataaagataaaataaactaattcaaaacatgtatcaataatgcctg 3286
Query: 817 gcgtctcaggatatcaatctatacttattatatgaatctcatgttttcattattattgca 876
||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 3287 gcgtctcagaatatcaatctatacttattatatgaatctaatgttttcattataattgca 3346
Query: 877 tgatgccactcaattctaatggtgagtcaataacactgt 915
|||||| |||| |||||||| ||||||||||| |||||
Sbjct: 3347 tgatgcagctcagttctaatgttgagtcaataaaactgt 3385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,602
Number of Sequences: 1807
Number of extensions: 18602
Number of successful extensions: 2820
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)