BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC05FM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1289 1144 0.0
>3x_Contig1289
Length = 5567
Score = 1144 bits (577), Expect = 0.0
Identities = 658/681 (96%), Gaps = 4/681 (0%)
Strand = Plus / Plus
Query: 202 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatatccttcattagtctcttgaaacagaagaagaccattctggaagtcaataagttcga 63
Query: 262 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 acggtacaagaaaccaatgaaacgaaccaaacccaaacctcttctcttagcggcagccat 123
Query: 322 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 cttatagtattcatcggacatcatttcaggttgtagaggagtaccgtcttcgtttgtagg 183
Query: 382 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tagttgatcagtccatcctgtttggaattcagtttgacatctttggactaagtaatgcaa 243
Query: 442 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaccaagtgagaaccagtcttatctggggtttctgagtctttaatgctatcatctaagtc 303
Query: 502 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttaacgaccttaccacataattgcgcgtacattgatgaccaatgaggttcatcgcaggc 363
Query: 562 cttattgaaaatttgttggatgacaatcttcaaagtctcacccttttcttcccatctaga 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cttattgaaaatttgttggatgacaatcttcaaagtctcacccttttcttcccatctaga 423
Query: 622 ttggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaattt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttggttagcgatcttcatgatatcatcagaaataggttcgaacatttctaatgtcaattt 483
Query: 682 attcagcaatgacttcatctttcttgatgcttcttccgcgttcgt-aagttctgtttcgt 740
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||
Sbjct: 484 attcagcaatgacttcatctttcttgatgcttcttccgcg-tcgtaaagttctgttccgt 542
Query: 741 ctgggactaacttgactcctgtttttcttcatctttaaatttagaaaaccatctattanc 800
|||| ||||||||||| ||| ||||||||||| ||| |||||| || |||||||||| |
Sbjct: 543 ctggagctaacttgacttctg-ttttcttcatc-ttagatttaggaacccatctattagc 600
Query: 801 acttgngnacaatggggcaaccttcaactttggctcttcgactttttnctttctgaattt 860
||||| | |||||||||||||| | ||||||||||||||||| || || ||||||| |
Sbjct: 601 acttgggaccaatggggcaacctcaacctttggctcttcgacttcttcctctctgaatct 660
Query: 861 ttcacggtcctttttggaagt 881
||||||||||||| |||||||
Sbjct: 661 ttcacggtcctttctggaagt 681
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6377
Number of Sequences: 1807
Number of extensions: 6377
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)