BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC23ZC05RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1332 0.0
>3x_Contig1763
Length = 22654
Score = 1332 bits (672), Expect = 0.0
Identities = 731/743 (98%), Gaps = 6/743 (0%)
Strand = Plus / Plus
Query: 52 ggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaaaattga 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21882 ggtagatcctgctgtcgttattaaatcccaatcgtttatggaaatattatggaaaattga 21941
Query: 112 agtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccatactgtaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21942 agtatgttccttcaaaaatgatatcaactcaggctgaccccttgagttaccatactgtaa 22001
Query: 172 tgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatgtataca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22002 tgctacacccaatgggacatcctgacatatttctaaatcacttttgtccctatgtataca 22061
Query: 232 tccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacgaaatgct 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22062 tccttcaacggcccctgtcccattaacatcatcgagagaaacacttttaaacgaaatgct 22121
Query: 292 ttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatttggatc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22122 ttcgaatgggaacatattaccagagggcattcctgccccaaggaacacgatatttggatc 22181
Query: 352 gctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctcatcact 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22182 gctaaaatatttcatagttgtcttgataggcgaggccttacgaatcttggcctcatcact 22241
Query: 412 caataaatgtaacacattagttctacagcccatatctttaactgtcattactgtaactac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22242 caataaatgtaacacattagttctacagcccatatctttaactgtcattactgtaactac 22301
Query: 472 ccgtcgtcagttagttgggtaagctataattcatgtcaaanaaaacagacacacaataca 531
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 22302 ccgtcgtcagttagttgggtaagctataattcatgtcaaaaaaaacagacacacaataca 22361
Query: 532 tcacttcatggatccct-aaacaaaag-agcacagcattgttattcctgatccccattta 589
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 22362 tcacttcatggatccctaaaacaaaagaagcacagcattgttattcctgatccccattta 22421
Query: 590 tacaattcagaaattaaattagctcaaggggccccccacaa-ttactccactttcgtttg 648
||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||||||
Sbjct: 22422 tacaattcagaaattaaattagctcaagggg-ccccaacaatttactccac-ttcgtttg 22479
Query: 649 caacatttagagtattatttgctccatcgttcatctaaa-ctctttgatcccgctactga 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 22480 caacatttagagtattatttgctccatcgttcatctaaacctctttgatcccgctactga 22539
Query: 708 cattttctattaaaaaaataaagaccgttcatgacacctgtcacaattctaattccaatc 767
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 22540 cattttctatcaaaaaaataaagaccgtccatgacacctgtcacaattctaattccaatc 22599
Query: 768 cgaaacaattcttgaaagatact 790
|| ||||||||||||| ||||||
Sbjct: 22600 cggaacaattcttgaaggatact 22622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6323
Number of Sequences: 1807
Number of extensions: 6323
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)